RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 CEP57L1Q8IYX8 460 aa21.39■■□□□ 1.01
VPS28-207ENST00000526977 MB21D1Q8N884 522 aa21.39■■□□□ 1.01
VPS28-207ENST00000526977 NAT10Q9H0A0 1025 aaKnown RBP21.39■■□□□ 1.01
VPS28-207ENST00000526977 OPLAHO14841 1288 aa21.38■■□□□ 1.01
VPS28-207ENST00000526977 PNOCQ13519 176 aa21.38■■□□□ 1.01
VPS28-207ENST00000526977 DPCR1Q3MIW9 517 aa21.38■■□□□ 1.01
VPS28-207ENST00000526977 MCF2L2Q86YR7 1114 aa21.38■■□□□ 1.01
VPS28-207ENST00000526977 SAMD3Q8N6K7 520 aa21.38■■□□□ 1.01
VPS28-207ENST00000526977 REPS2Q8NFH8 660 aa21.38■■□□□ 1.01
VPS28-207ENST00000526977 LOC285556D6RIA3 1793 aa21.38■■□□□ 1.01
VPS28-207ENST00000526977 GOLGA6L19H0YKK7 550 aa21.38■■□□□ 1.01
VPS28-207ENST00000526977 GCOM1H8Y6P7 765 aaPredicted RBP21.38■■□□□ 1.01
VPS28-207ENST00000526977 POLR2MP0CAP2 368 aa21.38■■□□□ 1.01
VPS28-207ENST00000526977 OSBPP22059 807 aa21.38■■□□□ 1.01
VPS28-207ENST00000526977 SPRYD7Q5W111 196 aa21.38■■□□□ 1.01
VPS28-207ENST00000526977 LBX2Q6XYB7 198 aa21.38■■□□□ 1.01
VPS28-207ENST00000526977 NEK8Q86SG6 692 aa21.38■■□□□ 1.01
VPS28-207ENST00000526977 TBCKQ8TEA7 893 aa21.38■■□□□ 1.01
VPS28-207ENST00000526977 MAP3K20Q9NYL2 800 aaKnown RBP21.38■■□□□ 1.01
VPS28-207ENST00000526977 MS4A4AQ96JQ5 239 aa21.37■■□□□ 1.01
VPS28-207ENST00000526977 SERTAD1Q9UHV2 236 aa21.37■■□□□ 1.01
VPS28-207ENST00000526977 TRPM7Q96QT4 1865 aa21.37■■□□□ 1.01
VPS28-207ENST00000526977 RLFQ13129 1914 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 SPDYE3A6NKU9 549 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 BECN2A8MW95 431 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 TOMM70O94826 608 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 ALAS1P13196 640 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 MCM7P33993 719 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 ORC2Q13416 577 aaPredicted RBP21.36■■□□□ 1.01
VPS28-207ENST00000526977 GPAT2Q6NUI2 795 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 C4orf32Q8N8J7 132 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 EPSTI1Q96J88 318 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 P2RX7Q99572 595 aaKnown RBP21.36■■□□□ 1.01
VPS28-207ENST00000526977 TEX13BQ9BXU2 312 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 ASCC2Q9H1I8 757 aaPredicted RBP21.36■■□□□ 1.01
VPS28-207ENST00000526977 ZNF214Q9UL59 606 aaPredicted RBP21.36■■□□□ 1.01
VPS28-207ENST00000526977 ZKSCAN5Q9Y2L8 839 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 PARP14Q460N5 1801 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 FOXN1O15353 648 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 CFBP00751 764 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 TAL1P17542 331 aaPredicted RBP21.36■■□□□ 1.01
VPS28-207ENST00000526977 TMEM132BQ14DG7 1078 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 TKFCQ3LXA3 575 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 ISM2Q6H9L7 571 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 SAPCD2Q86UD0 394 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 BPIFA3Q9BQP9 254 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 SLC45A1Q9Y2W3 748 aa21.36■■□□□ 1.01
VPS28-207ENST00000526977 PLA2G4DQ86XP0 818 aa21.35■■□□□ 1.01
VPS28-207ENST00000526977 PDILTQ8N807 584 aa21.35■■□□□ 1.01
VPS28-207ENST00000526977 CLEC4DQ8WXI8 215 aa21.35■■□□□ 1.01
VPS28-207ENST00000526977 TRERF1Q96PN7 1200 aa21.35■■□□□ 1.01
VPS28-207ENST00000526977 NAP1L4Q99733 375 aaKnown RBP21.35■■□□□ 1.01
VPS28-207ENST00000526977 MAF1Q9H063 256 aa21.35■■□□□ 1.01
VPS28-207ENST00000526977 PNMA3Q9UL41 463 aa21.35■■□□□ 1.01
VPS28-207ENST00000526977 PCDHA5Q9Y5H7 936 aa21.35■■□□□ 1.01
VPS28-207ENST00000526977 ACTN4O43707 911 aaKnown RBP21.34■■□□□ 1.01
VPS28-207ENST00000526977 MSNP26038 577 aaKnown RBP21.34■■□□□ 1.01
VPS28-207ENST00000526977 STAT3P40763 770 aa21.34■■□□□ 1.01
VPS28-207ENST00000526977 ZNF75DP51815 510 aa21.34■■□□□ 1.01
VPS28-207ENST00000526977 GHRHRQ02643 423 aa21.34■■□□□ 1.01
VPS28-207ENST00000526977 IL17AQ16552 155 aa21.34■■□□□ 1.01
VPS28-207ENST00000526977 SNRNP48Q6IEG0 339 aaKnown RBP21.34■■□□□ 1.01
VPS28-207ENST00000526977 AOPEPQ8N6M6 819 aa21.34■■□□□ 1.01
VPS28-207ENST00000526977 TRIM5Q9C035 493 aa21.34■■□□□ 1.01
VPS28-207ENST00000526977 CCL15-CCL14A0A0B4J2E2 113 aa21.34■■□□□ 1.01
VPS28-207ENST00000526977 VWA3AA6NCI4 1184 aa21.34■■□□□ 1.01
VPS28-207ENST00000526977 USP11P51784 963 aa21.34■■□□□ 1.01
VPS28-207ENST00000526977 ZNF157P51786 506 aaPredicted RBP21.34■■□□□ 1.01
VPS28-207ENST00000526977 HERVK_113P62684 666 aa21.34■■□□□ 1.01
VPS28-207ENST00000526977 CCL15Q16663 113 aa21.34■■□□□ 1.01
VPS28-207ENST00000526977 LETM2Q2VYF4 491 aa21.34■■□□□ 1.01
VPS28-207ENST00000526977 SYMPKQ92797 1274 aaKnown RBP21.34■■□□□ 1.01
VPS28-207ENST00000526977 ANO3Q9BYT9 981 aa21.34■■□□□ 1.01
VPS28-207ENST00000526977 HOOK1Q9UJC3 728 aaKnown RBP21.34■■□□□ 1.01
VPS28-207ENST00000526977 A0A087X0B3 334 aa21.33■■□□□ 1.01
VPS28-207ENST00000526977 CCNT1O60563 726 aaKnown RBP21.33■■□□□ 1.01
VPS28-207ENST00000526977 HOXA13P31271 388 aaPredicted RBP21.33■■□□□ 1.01
VPS28-207ENST00000526977 HSD17B4P51659 736 aa21.33■■□□□ 1.01
VPS28-207ENST00000526977 SARM1Q6SZW1 724 aa21.33■■□□□ 1.01
VPS28-207ENST00000526977 LAD1O00515 517 aa21.33■■□□□ 1
VPS28-207ENST00000526977 POSTNQ15063 836 aa21.33■■□□□ 1
VPS28-207ENST00000526977 PPP4R3AQ6IN85 833 aa21.33■■□□□ 1
VPS28-207ENST00000526977 RGMBQ6NW40 437 aa21.33■■□□□ 1
VPS28-207ENST00000526977 KANK3Q6NY19 840 aa21.33■■□□□ 1
VPS28-207ENST00000526977 TBC1D5Q92609 795 aa21.33■■□□□ 1
VPS28-207ENST00000526977 EHMT1Q9H9B1 1298 aa21.33■■□□□ 1
VPS28-207ENST00000526977 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.33■■□□□ 1
VPS28-207ENST00000526977 NFIBO00712 420 aa21.32■■□□□ 1
VPS28-207ENST00000526977 MKRN3Q13064 507 aaKnown RBP21.32■■□□□ 1
VPS28-207ENST00000526977 PLS1Q14651 629 aa21.32■■□□□ 1
VPS28-207ENST00000526977 ARL6IP4Q66PJ3 421 aaKnown RBP21.32■■□□□ 1
VPS28-207ENST00000526977 ANKRD23Q86SG2 305 aa21.32■■□□□ 1
VPS28-207ENST00000526977 SPC24Q8NBT2 197 aa21.32■■□□□ 1
VPS28-207ENST00000526977 GTF3C2Q8WUA4 911 aaPredicted RBP21.32■■□□□ 1
VPS28-207ENST00000526977 ZNF830Q96NB3 372 aaPredicted RBP21.32■■□□□ 1
VPS28-207ENST00000526977 HOMER2Q9NSB8 354 aa21.32■■□□□ 1
VPS28-207ENST00000526977 RNF146Q9NTX7 359 aa21.32■■□□□ 1
VPS28-207ENST00000526977 RIPK3Q9Y572 518 aa21.32■■□□□ 1
VPS28-207ENST00000526977 TLL2Q9Y6L7 1015 aa21.32■■□□□ 1
VPS28-207ENST00000526977 GCFC2P16383 781 aaKnown RBP21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms