RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 ADD3Q9UEY8 706 aaKnown RBP11.29□□□□□ -0.6
MCF2-209ENST00000520602 LAMB4A4D0S4 1761 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 RHBDL3P58872 404 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 STK4Q13043 487 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 SYDE2Q5VT97 1194 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 ANKRD13CQ8N6S4 541 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 PANX2Q96RD6 677 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 TRIM9Q9C026 710 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 GOPCQ9HD26 462 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 ZNF277Q9NRM2 450 aaPredicted RBP11.28□□□□□ -0.6
MCF2-209ENST00000520602 SUGT1Q9Y2Z0 365 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 LRP6O75581 1613 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 E9PMD0 336 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 ENC1O14682 589 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 MYL1P05976 194 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 FXR1P51114 621 aaKnown RBP eCLIP11.28□□□□□ -0.6
MCF2-209ENST00000520602 IQCEQ6IPM2 695 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 CCDC84Q86UT8 332 aaPredicted RBP11.28□□□□□ -0.6
MCF2-209ENST00000520602 MYCT1Q8N699 235 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 STK17AQ9UEE5 414 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 FGRP09769 529 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 STAT3P40763 770 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 SARSP49591 514 aaKnown RBP11.28□□□□□ -0.6
MCF2-209ENST00000520602 CYP27A1Q02318 531 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 PRKG1Q13976 671 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 VPS36Q86VN1 386 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 MB21D1Q8N884 522 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 SMCR8Q8TEV9 937 aaPredicted RBP11.28□□□□□ -0.6
MCF2-209ENST00000520602 CHURC1Q8WUH1 139 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 SH2D4AQ9H788 454 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 ZBTB12Q9Y330 459 aaPredicted RBP11.28□□□□□ -0.6
MCF2-209ENST00000520602 PCDHB13Q9Y5F0 798 aa11.28□□□□□ -0.6
MCF2-209ENST00000520602 KDM3AQ9Y4C1 1321 aa11.27□□□□□ -0.6
MCF2-209ENST00000520602 TMCO5BA8MYB1 307 aa11.27□□□□□ -0.6
MCF2-209ENST00000520602 GAS7O60861 476 aa11.27□□□□□ -0.6
MCF2-209ENST00000520602 EIF3JO75822 258 aaKnown RBP11.27□□□□□ -0.6
MCF2-209ENST00000520602 MYCLP12524 364 aaPredicted RBP11.27□□□□□ -0.6
MCF2-209ENST00000520602 NSMFQ6X4W1 530 aa11.27□□□□□ -0.6
MCF2-209ENST00000520602 HS2ST1Q7LGA3 356 aa11.27□□□□□ -0.6
MCF2-209ENST00000520602 OGFRQ9NZT2 677 aa11.27□□□□□ -0.6
MCF2-209ENST00000520602 COL1A1P02452 1464 aaPredicted RBP11.27□□□□□ -0.61
MCF2-209ENST00000520602 FAM237AA0A1B0GTK4 181 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 GCFC2P16383 781 aaKnown RBP11.27□□□□□ -0.61
MCF2-209ENST00000520602 HOXA10P31260 410 aaPredicted RBP11.27□□□□□ -0.61
MCF2-209ENST00000520602 MAGEA1P43355 309 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 HHIPL2Q6UWX4 724 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 STXBP4Q6ZWJ1 553 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 ZFPM1Q8IX07 1006 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 SLFN12Q8IYM2 578 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 TTLL6Q8N841 843 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 WDR24Q96S15 920 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 TTC26A0AVF1 554 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 POTEB3A0JP26 581 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 POTECB2RU33 542 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 ADAMTS3O15072 1205 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 PLA2G4BP0C869 781 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 PRPHP41219 470 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 STRIP1Q5VSL9 837 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 ANKRD40Q6AI12 368 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 POTEBQ6S5H4 581 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 BCL9LQ86UU0 1499 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 ELOA2Q8IYF1 753 aaPredicted RBP11.27□□□□□ -0.61
MCF2-209ENST00000520602 ADSSL1Q8N142 457 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 CERS5Q8N5B7 392 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 RDH13Q8NBN7 331 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 GBP3Q9H0R5 595 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 THAP9Q9H5L6 903 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 PCDHAC2Q9Y5I4 1007 aa11.27□□□□□ -0.61
MCF2-209ENST00000520602 SLIT2O94813 1529 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 GCOM1H8Y6P7 765 aaPredicted RBP11.26□□□□□ -0.61
MCF2-209ENST00000520602 POLR2MP0CAP2 368 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 ALAS1P13196 640 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 ADAM9Q13443 819 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 PDXDC2PQ6P474 469 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 NYAP1Q6ZVC0 841 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 HINFPQ9BQA5 517 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 EPC1Q9H2F5 836 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 PHLPP2Q6ZVD8 1323 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 SLC37A4O43826 429 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 RPL13P26373 211 aaKnown RBP11.26□□□□□ -0.61
MCF2-209ENST00000520602 STAT2P52630 851 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 WDR78Q5VTH9 848 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 IFIH1Q9BYX4 1025 aaKnown RBP11.26□□□□□ -0.61
MCF2-209ENST00000520602 ABHD10Q9NUJ1 306 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 PODXL2Q9NZ53 605 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 ZHX1Q9UKY1 873 aaPredicted RBP11.26□□□□□ -0.61
MCF2-209ENST00000520602 BCS1LQ9Y276 419 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 PHLPP1O60346 1717 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 DDTLA6NHG4 134 aaPredicted RBP11.26□□□□□ -0.61
MCF2-209ENST00000520602 LGALS16A8MUM7 142 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 RNASE9P60153 205 aaKnown RBP11.26□□□□□ -0.61
MCF2-209ENST00000520602 ARHGAP4P98171 946 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 IL17AQ16552 155 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 CRY2Q49AN0 593 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 FBXO38Q6PIJ6 1188 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 RIC8AQ9NPQ8 531 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 ADGRG1Q9Y653 693 aa11.26□□□□□ -0.61
MCF2-209ENST00000520602 SPEF2Q9C093 1822 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 SFI1A8K8P3 1242 aa11.25□□□□□ -0.61
MCF2-209ENST00000520602 FOSP01100 380 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms