RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 WDR64B1ANS9 1081 aa9.94□□□□□ -0.82
LSM1-202ENST00000520286 TRAF5O00463 557 aa9.94□□□□□ -0.82
LSM1-202ENST00000520286 SOD2P04179 222 aa9.94□□□□□ -0.82
LSM1-202ENST00000520286 CEACAM5P06731 702 aa9.94□□□□□ -0.82
LSM1-202ENST00000520286 ENDOUP21128 410 aaKnown RBP9.94□□□□□ -0.82
LSM1-202ENST00000520286 LTKP29376 864 aa9.94□□□□□ -0.82
LSM1-202ENST00000520286 NEK2P51955 445 aa9.94□□□□□ -0.82
LSM1-202ENST00000520286 DSG1Q02413 1049 aa9.94□□□□□ -0.82
LSM1-202ENST00000520286 MCL1Q07820 350 aa9.94□□□□□ -0.82
LSM1-202ENST00000520286 NFE2Q16621 373 aaPredicted RBP9.94□□□□□ -0.82
LSM1-202ENST00000520286 TMEM177Q53S58 311 aa9.94□□□□□ -0.82
LSM1-202ENST00000520286 FAM47CQ5HY64 1035 aa9.94□□□□□ -0.82
LSM1-202ENST00000520286 MBLAC2Q68D91 279 aa9.94□□□□□ -0.82
LSM1-202ENST00000520286 THAP5Q7Z6K1 395 aa9.94□□□□□ -0.82
LSM1-202ENST00000520286 CNTD1Q8N815 330 aa9.94□□□□□ -0.82
LSM1-202ENST00000520286 COG1Q8WTW3 980 aa9.94□□□□□ -0.82
LSM1-202ENST00000520286 TRIM8Q9BZR9 551 aa9.94□□□□□ -0.82
LSM1-202ENST00000520286 ZKSCAN5Q9Y2L8 839 aa9.94□□□□□ -0.82
LSM1-202ENST00000520286 RB1CC1Q8TDY2 1594 aa9.93□□□□□ -0.82
LSM1-202ENST00000520286 MYO1BO43795 1136 aa9.93□□□□□ -0.82
LSM1-202ENST00000520286 ADCYAP1R1P41586 468 aa9.93□□□□□ -0.82
LSM1-202ENST00000520286 GATA4P43694 442 aa9.93□□□□□ -0.82
LSM1-202ENST00000520286 DNM2P50570 870 aa9.93□□□□□ -0.82
LSM1-202ENST00000520286 CLCN7P51798 805 aa9.93□□□□□ -0.82
LSM1-202ENST00000520286 NFIAQ12857 509 aa9.93□□□□□ -0.82
LSM1-202ENST00000520286 CPNE8Q86YQ8 564 aa9.93□□□□□ -0.82
LSM1-202ENST00000520286 NAT16Q8N8M0 369 aa9.93□□□□□ -0.82
LSM1-202ENST00000520286 SMC1BQ8NDV3 1235 aa9.93□□□□□ -0.82
LSM1-202ENST00000520286 CCDC136Q96JN2 1154 aa9.93□□□□□ -0.82
LSM1-202ENST00000520286 OSBPL1AQ9BXW6 950 aa9.93□□□□□ -0.82
LSM1-202ENST00000520286 CHMP4AQ9BY43 222 aa9.93□□□□□ -0.82
LSM1-202ENST00000520286 IPPKQ9H8X2 491 aa9.93□□□□□ -0.82
LSM1-202ENST00000520286 CRTAC1Q9NQ79 661 aa9.93□□□□□ -0.82
LSM1-202ENST00000520286 B4GALT6Q9UBX8 382 aa9.93□□□□□ -0.82
LSM1-202ENST00000520286 CCDC66A2RUB6 948 aa9.92□□□□□ -0.82
LSM1-202ENST00000520286 FKBP9O95302 570 aa9.92□□□□□ -0.82
LSM1-202ENST00000520286 TBC1D8O95759 1140 aa9.92□□□□□ -0.82
LSM1-202ENST00000520286 ST5P78524 1137 aa9.92□□□□□ -0.82
LSM1-202ENST00000520286 LAPTM5Q13571 262 aa9.92□□□□□ -0.82
LSM1-202ENST00000520286 FKBP9P1Q75LS8 142 aa9.92□□□□□ -0.82
LSM1-202ENST00000520286 CHST14Q8NCH0 376 aa9.92□□□□□ -0.82
LSM1-202ENST00000520286 TSR2Q969E8 191 aaKnown RBP9.92□□□□□ -0.82
LSM1-202ENST00000520286 FBXW5Q969U6 566 aa9.92□□□□□ -0.82
LSM1-202ENST00000520286 GPR101Q96P66 508 aaPredicted RBP9.92□□□□□ -0.82
LSM1-202ENST00000520286 DBNDD2Q9BQY9 259 aa9.92□□□□□ -0.82
LSM1-202ENST00000520286 LRRC4CQ9HCJ2 640 aa9.92□□□□□ -0.82
LSM1-202ENST00000520286 SEMA3GQ9NS98 782 aa9.92□□□□□ -0.82
LSM1-202ENST00000520286 ATG3Q9NT62 314 aa9.92□□□□□ -0.82
LSM1-202ENST00000520286 TRHDEQ9UKU6 1024 aa9.92□□□□□ -0.82
LSM1-202ENST00000520286 PLAGL2Q9UPG8 496 aa9.92□□□□□ -0.82
LSM1-202ENST00000520286 PCDHA11Q9Y5I1 949 aa9.92□□□□□ -0.82
LSM1-202ENST00000520286 FAM47E-STBD1D6RA91 191 aa9.91□□□□□ -0.82
LSM1-202ENST00000520286 WNT9AO14904 365 aa9.91□□□□□ -0.82
LSM1-202ENST00000520286 GSTA4O15217 222 aa9.91□□□□□ -0.82
LSM1-202ENST00000520286 GRK2P25098 689 aa9.91□□□□□ -0.82
LSM1-202ENST00000520286 GRK3P35626 688 aa9.91□□□□□ -0.82
LSM1-202ENST00000520286 PPP2R5AQ15172 486 aa9.91□□□□□ -0.82
LSM1-202ENST00000520286 OVCH1Q7RTY7 1134 aa9.91□□□□□ -0.82
LSM1-202ENST00000520286 CHAMP1Q96JM3 812 aa9.91□□□□□ -0.82
LSM1-202ENST00000520286 THG1LQ9NWX6 298 aaKnown RBP9.91□□□□□ -0.82
LSM1-202ENST00000520286 PPARGC1AQ9UBK2 798 aaKnown RBP9.91□□□□□ -0.82
LSM1-202ENST00000520286 TIMM13Q9Y5L4 95 aaPredicted RBP9.91□□□□□ -0.82
LSM1-202ENST00000520286 TSPAN6O43657 245 aa9.9□□□□□ -0.82
LSM1-202ENST00000520286 LSSP48449 732 aa9.9□□□□□ -0.82
LSM1-202ENST00000520286 MECP2P51608 486 aaKnown RBP9.9□□□□□ -0.82
LSM1-202ENST00000520286 LSAMPQ13449 338 aa9.9□□□□□ -0.82
LSM1-202ENST00000520286 ATP13A4Q4VNC1 1196 aa9.9□□□□□ -0.82
LSM1-202ENST00000520286 CYP2R1Q6VVX0 501 aa9.9□□□□□ -0.82
LSM1-202ENST00000520286 ZPBP2Q6X784 338 aa9.9□□□□□ -0.82
LSM1-202ENST00000520286 C16orf59Q7L2K0 433 aa9.9□□□□□ -0.82
LSM1-202ENST00000520286 TMPRSS7Q7RTY8 843 aa9.9□□□□□ -0.82
LSM1-202ENST00000520286 CREG2Q8IUH2 290 aa9.9□□□□□ -0.82
LSM1-202ENST00000520286 WDR75Q8IWA0 830 aaKnown RBP9.9□□□□□ -0.82
LSM1-202ENST00000520286 DCAF5Q96JK2 942 aa9.9□□□□□ -0.82
LSM1-202ENST00000520286 C8orf48Q96LL4 319 aa9.9□□□□□ -0.82
LSM1-202ENST00000520286 YIPF4Q9BSR8 244 aa9.9□□□□□ -0.82
LSM1-202ENST00000520286 SHTN1A0MZ66 631 aa9.89□□□□□ -0.83
LSM1-202ENST00000520286 TMEM82A0PJX8 343 aa9.89□□□□□ -0.83
LSM1-202ENST00000520286 PTPDC1A2A3K4 754 aa9.89□□□□□ -0.83
LSM1-202ENST00000520286 RPL10P27635 214 aaKnown RBP9.89□□□□□ -0.83
LSM1-202ENST00000520286 RAB27AP51159 221 aa9.89□□□□□ -0.83
LSM1-202ENST00000520286 OCRLQ01968 901 aa9.89□□□□□ -0.83
LSM1-202ENST00000520286 SYDE2Q5VT97 1194 aa9.89□□□□□ -0.83
LSM1-202ENST00000520286 IQSEC1Q6DN90 963 aa9.89□□□□□ -0.83
LSM1-202ENST00000520286 SHKBP1Q8TBC3 707 aa9.89□□□□□ -0.83
LSM1-202ENST00000520286 CHTF18Q8WVB6 975 aa9.89□□□□□ -0.83
LSM1-202ENST00000520286 SLC52A1Q9NWF4 448 aa9.89□□□□□ -0.83
LSM1-202ENST00000520286 GEMIN8Q9NWZ8 242 aaKnown RBP9.89□□□□□ -0.83
LSM1-202ENST00000520286 FBXL7Q9UJT9 491 aa9.89□□□□□ -0.83
LSM1-202ENST00000520286 C7orf72A4D263 438 aa9.88□□□□□ -0.83
LSM1-202ENST00000520286 GABRDO14764 452 aa9.88□□□□□ -0.83
LSM1-202ENST00000520286 PRKD3O94806 890 aa9.88□□□□□ -0.83
LSM1-202ENST00000520286 ATP2A2P16615 1042 aaKnown RBP9.88□□□□□ -0.83
LSM1-202ENST00000520286 BCL6P41182 706 aa9.88□□□□□ -0.83
LSM1-202ENST00000520286 GTF2A2P52657 109 aa9.88□□□□□ -0.83
LSM1-202ENST00000520286 RPL11P62913 178 aaKnown RBP9.88□□□□□ -0.83
LSM1-202ENST00000520286 TEKQ02763 1124 aa9.88□□□□□ -0.83
LSM1-202ENST00000520286 IFI16Q16666 785 aaKnown RBP9.88□□□□□ -0.83
LSM1-202ENST00000520286 WAPLQ7Z5K2 1190 aa9.88□□□□□ -0.83
LSM1-202ENST00000520286 C11orf74Q86VG3 221 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms