RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 NFKB2Q00653 900 aa10.9□□□□□ -0.66
USP53-206ENST00000510737 EEF1DP3Q658K8 133 aa10.9□□□□□ -0.66
USP53-206ENST00000510737 ZNF513Q8N8E2 541 aaPredicted RBP10.9□□□□□ -0.66
USP53-206ENST00000510737 CGGBP1Q9UFW8 167 aaPredicted RBP10.9□□□□□ -0.66
USP53-206ENST00000510737 RWDD3Q9Y3V2 267 aa10.9□□□□□ -0.66
USP53-206ENST00000510737 TOP2BQ02880 1626 aa10.9□□□□□ -0.66
USP53-206ENST00000510737 SCAMP3O14828 347 aaKnown RBP10.89□□□□□ -0.67
USP53-206ENST00000510737 PRICKLE3O43900 615 aaPredicted RBP10.89□□□□□ -0.67
USP53-206ENST00000510737 MFAP1P55081 439 aaKnown RBP10.89□□□□□ -0.67
USP53-206ENST00000510737 HEATR6Q6AI08 1181 aaKnown RBP10.89□□□□□ -0.67
USP53-206ENST00000510737 FRMD5Q7Z6J6 570 aa10.89□□□□□ -0.67
USP53-206ENST00000510737 RASGRP4Q8TDF6 673 aa10.89□□□□□ -0.67
USP53-206ENST00000510737 ZNF526Q8TF50 670 aaPredicted RBP10.89□□□□□ -0.67
USP53-206ENST00000510737 TEPSINQ96N21 525 aa10.89□□□□□ -0.67
USP53-206ENST00000510737 CRBNQ96SW2 442 aa10.89□□□□□ -0.67
USP53-206ENST00000510737 PHAXQ9H814 394 aaKnown RBP10.89□□□□□ -0.67
USP53-206ENST00000510737 SLC7A5Q01650 507 aa10.88□□□□□ -0.67
USP53-206ENST00000510737 SPATA31D1Q6ZQQ2 1576 aa10.88□□□□□ -0.67
USP53-206ENST00000510737 CPNE8Q86YQ8 564 aa10.88□□□□□ -0.67
USP53-206ENST00000510737 ARHGEF39Q8N4T4 335 aa10.88□□□□□ -0.67
USP53-206ENST00000510737 C19orf47Q8N9M1 422 aaKnown RBP10.88□□□□□ -0.67
USP53-206ENST00000510737 SHDQ96IW2 340 aa10.88□□□□□ -0.67
USP53-206ENST00000510737 MTA3Q9BTC8 594 aa10.88□□□□□ -0.67
USP53-206ENST00000510737 RUSC2Q8N2Y8 1516 aa10.88□□□□□ -0.67
USP53-206ENST00000510737 GLI2P10070 1586 aa10.87□□□□□ -0.67
USP53-206ENST00000510737 VAMP1P23763 118 aa10.87□□□□□ -0.67
USP53-206ENST00000510737 PMLP29590 882 aa10.87□□□□□ -0.67
USP53-206ENST00000510737 LIPIQ6XZB0 460 aa10.87□□□□□ -0.67
USP53-206ENST00000510737 SAPCD2Q86UD0 394 aa10.87□□□□□ -0.67
USP53-206ENST00000510737 NLGN1Q8N2Q7 840 aa10.87□□□□□ -0.67
USP53-206ENST00000510737 GPRASP2Q96D09 838 aa10.87□□□□□ -0.67
USP53-206ENST00000510737 RNF38Q9H0F5 515 aa10.87□□□□□ -0.67
USP53-206ENST00000510737 GULP1Q9UBP9 304 aa10.87□□□□□ -0.67
USP53-206ENST00000510737 PMF1-BGLAPU3KQ54 211 aa10.87□□□□□ -0.67
USP53-206ENST00000510737 CELA3BP08861 270 aa10.86□□□□□ -0.67
USP53-206ENST00000510737 KCNC1P48547 511 aa10.86□□□□□ -0.67
USP53-206ENST00000510737 ADAT2Q7Z6V5 191 aaKnown RBP10.86□□□□□ -0.67
USP53-206ENST00000510737 ALG3Q92685 438 aa10.86□□□□□ -0.67
USP53-206ENST00000510737 SPATA25Q9BR10 227 aa10.86□□□□□ -0.67
USP53-206ENST00000510737 DBR1Q9UK59 544 aaKnown RBP10.86□□□□□ -0.67
USP53-206ENST00000510737 BACE2Q9Y5Z0 518 aa10.86□□□□□ -0.67
USP53-206ENST00000510737 SLC12A7Q9Y666 1083 aa10.86□□□□□ -0.67
USP53-206ENST00000510737 C2orf71A6NGG8 1288 aa10.85□□□□□ -0.67
USP53-206ENST00000510737 NCAM1P13591 858 aa10.85□□□□□ -0.67
USP53-206ENST00000510737 C9orf131Q5VYM1 1079 aa10.85□□□□□ -0.67
USP53-206ENST00000510737 PRRT2Q7Z6L0 340 aaPredicted RBP10.85□□□□□ -0.67
USP53-206ENST00000510737 LZTR1Q8N653 840 aa10.85□□□□□ -0.67
USP53-206ENST00000510737 FAM169BQ8N8A8 192 aa10.85□□□□□ -0.67
USP53-206ENST00000510737 NOX5Q96PH1 765 aa10.85□□□□□ -0.67
USP53-206ENST00000510737 GBP3Q9H0R5 595 aa10.85□□□□□ -0.67
USP53-206ENST00000510737 APEX2Q9UBZ4 518 aa10.85□□□□□ -0.67
USP53-206ENST00000510737 HDLBPQ00341 1268 aaKnown RBP10.84□□□□□ -0.67
USP53-206ENST00000510737 RTP5Q14D33 572 aa10.84□□□□□ -0.67
USP53-206ENST00000510737 MBLAC2Q68D91 279 aa10.84□□□□□ -0.67
USP53-206ENST00000510737 B3GNT8Q7Z7M8 397 aa10.84□□□□□ -0.67
USP53-206ENST00000510737 RGS22Q8NE09 1264 aa10.84□□□□□ -0.67
USP53-206ENST00000510737 TSPAN17Q96FV3 270 aa10.84□□□□□ -0.67
USP53-206ENST00000510737 RCC1LQ96I51 464 aaKnown RBP10.84□□□□□ -0.67
USP53-206ENST00000510737 SH3D21A4FU49 640 aa10.83□□□□□ -0.68
USP53-206ENST00000510737 GJA8P48165 433 aa10.83□□□□□ -0.68
USP53-206ENST00000510737 SEPHS1P49903 392 aa10.83□□□□□ -0.68
USP53-206ENST00000510737 FAN1Q9Y2M0 1017 aa10.83□□□□□ -0.68
USP53-206ENST00000510737 PPM1BO75688 479 aa10.82□□□□□ -0.68
USP53-206ENST00000510737 NASPP49321 788 aaPredicted RBP10.82□□□□□ -0.68
USP53-206ENST00000510737 AMPD2Q01433 879 aa10.82□□□□□ -0.68
USP53-206ENST00000510737 NT5DC4Q86YG4 428 aa10.82□□□□□ -0.68
USP53-206ENST00000510737 OR6P1Q8NGX9 317 aa10.82□□□□□ -0.68
USP53-206ENST00000510737 SPATA32Q96LK8 384 aa10.82□□□□□ -0.68
USP53-206ENST00000510737 SIT1Q9Y3P8 196 aa10.82□□□□□ -0.68
USP53-206ENST00000510737 GRB10Q13322 594 aa10.81□□□□□ -0.68
USP53-206ENST00000510737 PPP2R5EQ16537 467 aa10.81□□□□□ -0.68
USP53-206ENST00000510737 KIAA1211LQ6NV74 962 aa10.81□□□□□ -0.68
USP53-206ENST00000510737 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.81□□□□□ -0.68
USP53-206ENST00000510737 MAP3K4Q9Y6R4 1608 aa10.8□□□□□ -0.68
USP53-206ENST00000510737 C7orf72A4D263 438 aa10.8□□□□□ -0.68
USP53-206ENST00000510737 NT5DC1Q5TFE4 455 aa10.8□□□□□ -0.68
USP53-206ENST00000510737 GGNQ86UU5 652 aa10.8□□□□□ -0.68
USP53-206ENST00000510737 NETO2Q8NC67 525 aa10.8□□□□□ -0.68
USP53-206ENST00000510737 SMARCC2Q8TAQ2 1214 aa10.8□□□□□ -0.68
USP53-206ENST00000510737 BDH2Q9BUT1 245 aa10.8□□□□□ -0.68
USP53-206ENST00000510737 ASXL2Q76L83 1435 aa10.8□□□□□ -0.68
USP53-206ENST00000510737 PCF11O94913 1555 aaKnown RBP10.79□□□□□ -0.68
USP53-206ENST00000510737 WRNQ14191 1432 aaPredicted RBP eCLIP10.79□□□□□ -0.68
USP53-206ENST00000510737 PAMP19021 973 aa10.79□□□□□ -0.68
USP53-206ENST00000510737 CASP7P55210 303 aa10.79□□□□□ -0.68
USP53-206ENST00000510737 DPF3Q92784 378 aa10.79□□□□□ -0.68
USP53-206ENST00000510737 SYT3Q9BQG1 590 aa10.79□□□□□ -0.68
USP53-206ENST00000510737 LGR4Q9BXB1 951 aa10.79□□□□□ -0.68
USP53-206ENST00000510737 GPRC5CQ9NQ84 441 aa10.79□□□□□ -0.68
USP53-206ENST00000510737 SPATA6Q9NWH7 488 aaPredicted RBP10.79□□□□□ -0.68
USP53-206ENST00000510737 DUSP10Q9Y6W6 482 aa10.79□□□□□ -0.68
USP53-206ENST00000510737 TTBK1Q5TCY1 1321 aaPredicted RBP10.79□□□□□ -0.68
USP53-206ENST00000510737 KIF21BO75037 1637 aa10.78□□□□□ -0.68
USP53-206ENST00000510737 NPHP3-ACAD11A0A0J9YXS1 232 aa10.78□□□□□ -0.68
USP53-206ENST00000510737 CYP4F3Q08477 520 aa10.78□□□□□ -0.68
USP53-206ENST00000510737 EFEMP1Q12805 493 aa10.78□□□□□ -0.68
USP53-206ENST00000510737 ZFYVE27Q5T4F4 411 aa10.78□□□□□ -0.68
USP53-206ENST00000510737 FERMT3Q86UX7 667 aa10.78□□□□□ -0.68
USP53-206ENST00000510737 CABP7Q86V35 215 aa10.78□□□□□ -0.68
USP53-206ENST00000510737 COPS5Q92905 334 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms