RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 KNDC1Q76NI1 1749 aa5.61□□□□□ -1.51
USP54-217ENST00000498213 ERMP1Q7Z2K6 904 aa5.61□□□□□ -1.51
USP54-217ENST00000498213 REC114Q7Z4M0 266 aa5.61□□□□□ -1.51
USP54-217ENST00000498213 TMEM87AQ8NBN3 555 aa5.61□□□□□ -1.51
USP54-217ENST00000498213 PIWIL2Q8TC59 973 aaKnown RBP5.61□□□□□ -1.51
USP54-217ENST00000498213 KRTAP4-11Q9BYQ6 195 aa5.61□□□□□ -1.51
USP54-217ENST00000498213 TRIT1Q9H3H1 467 aaKnown RBP5.61□□□□□ -1.51
USP54-217ENST00000498213 COPRSQ9NQ92 184 aa5.61□□□□□ -1.51
USP54-217ENST00000498213 LMCD1Q9NZU5 365 aa5.61□□□□□ -1.51
USP54-217ENST00000498213 CEP131Q9UPN4 1083 aa5.61□□□□□ -1.51
USP54-217ENST00000498213 VIRMAQ69YN4 1812 aaKnown RBP5.6□□□□□ -1.51
USP54-217ENST00000498213 ABCC6O95255 1503 aa5.6□□□□□ -1.51
USP54-217ENST00000498213 ANKRD36BQ8N2N9 1353 aa5.6□□□□□ -1.51
USP54-217ENST00000498213 CNTNAP4Q9C0A0 1308 aa5.6□□□□□ -1.51
USP54-217ENST00000498213 TNK2Q07912 1038 aa5.6□□□□□ -1.51
USP54-217ENST00000498213 MRPL58Q14197 206 aaKnown RBP5.6□□□□□ -1.51
USP54-217ENST00000498213 ARHGEF25Q86VW2 580 aa5.6□□□□□ -1.51
USP54-217ENST00000498213 LDHDQ86WU2 507 aa5.6□□□□□ -1.51
USP54-217ENST00000498213 DNAJB8Q8NHS0 232 aa5.6□□□□□ -1.51
USP54-217ENST00000498213 FBXO27Q8NI29 283 aa5.6□□□□□ -1.51
USP54-217ENST00000498213 CCDC120Q96HB5 630 aa5.6□□□□□ -1.51
USP54-217ENST00000498213 FAM84AQ96KN4 292 aa5.6□□□□□ -1.51
USP54-217ENST00000498213 CDK19Q9BWU1 502 aa5.6□□□□□ -1.51
USP54-217ENST00000498213 SEMA3GQ9NS98 782 aa5.6□□□□□ -1.51
USP54-217ENST00000498213 ST14Q9Y5Y6 855 aa5.6□□□□□ -1.51
USP54-217ENST00000498213 CASP8AP2Q9UKL3 1982 aa5.6□□□□□ -1.51
USP54-217ENST00000498213 WNK3Q9BYP7 1800 aa5.6□□□□□ -1.51
USP54-217ENST00000498213 PIK3C2AO00443 1686 aa5.59□□□□□ -1.51
USP54-217ENST00000498213 POLR3AO14802 1390 aaPredicted RBP5.59□□□□□ -1.51
USP54-217ENST00000498213 SZT2Q5T011 3432 aa5.59□□□□□ -1.51
USP54-217ENST00000498213 LRRC10BA6NIK2 292 aa5.59□□□□□ -1.51
USP54-217ENST00000498213 ZNF16P17020 682 aaPredicted RBP5.59□□□□□ -1.51
USP54-217ENST00000498213 GBP1P32455 592 aa5.59□□□□□ -1.51
USP54-217ENST00000498213 ECE1P42892 770 aa5.59□□□□□ -1.51
USP54-217ENST00000498213 MESP2Q0VG99 397 aa5.59□□□□□ -1.51
USP54-217ENST00000498213 KCNMB1Q16558 191 aa5.59□□□□□ -1.51
USP54-217ENST00000498213 FBXL19Q6PCT2 694 aa5.59□□□□□ -1.51
USP54-217ENST00000498213 SLFN12Q8IYM2 578 aa5.59□□□□□ -1.51
USP54-217ENST00000498213 CNTROBQ8N137 903 aa5.59□□□□□ -1.51
USP54-217ENST00000498213 CCDC74BQ96LY2 380 aa5.59□□□□□ -1.51
USP54-217ENST00000498213 GPATCH2Q9NW75 528 aa5.59□□□□□ -1.51
USP54-217ENST00000498213 POLR3KQ9Y2Y1 108 aaPredicted RBP5.59□□□□□ -1.51
USP54-217ENST00000498213 PPLO60437 1756 aa5.59□□□□□ -1.51
USP54-217ENST00000498213 CPSF1Q10570 1443 aaKnown RBP5.58□□□□□ -1.52
USP54-217ENST00000498213 KIAA1551Q9HCM1 1747 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 RAG1P15918 1043 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 HMGB2P26583 209 aaKnown RBP5.58□□□□□ -1.52
USP54-217ENST00000498213 MCM4P33991 863 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 AFMP43652 599 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 TMF1P82094 1093 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 APOBRQ0VD83 1088 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 CIAPIN1Q6FI81 312 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 TMPRSS7Q7RTY8 843 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 ZSWIM9Q86XI8 627 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 CREG2Q8IUH2 290 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 ZNF296Q8WUU4 475 aaPredicted RBP5.58□□□□□ -1.52
USP54-217ENST00000498213 RNF141Q8WVD5 230 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 ALPK1Q96QP1 1244 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 MPHOSPH9Q99550 1183 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 ASCC2Q9H1I8 757 aaPredicted RBP5.58□□□□□ -1.52
USP54-217ENST00000498213 TAF1DQ9H5J8 278 aaPredicted RBP5.58□□□□□ -1.52
USP54-217ENST00000498213 BRMS1Q9HCU9 246 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.58□□□□□ -1.52
USP54-217ENST00000498213 SLAMF8Q9P0V8 285 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 PCDHB14Q9Y5E9 798 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 TRIOBPQ9H2D6 2365 aa5.58□□□□□ -1.52
USP54-217ENST00000498213 KDM6AO15550 1401 aaPredicted RBP5.57□□□□□ -1.52
USP54-217ENST00000498213 PALLDQ8WX93 1383 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 CHURC1-FNTBB4DL54 471 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 CA12O43570 354 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 RAC2P15153 192 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 GARTP22102 1010 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 TPP2P29144 1249 aaPredicted RBP5.57□□□□□ -1.52
USP54-217ENST00000498213 MAP2K2P36507 400 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 ZNF76P36508 570 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 MLANAQ16655 118 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 CLEC16AQ2KHT3 1053 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 KRTAP19-4Q3LI73 84 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 SEZ6Q53EL9 994 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 NLGN1Q8N2Q7 840 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 DTWD2Q8NBA8 298 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 LINC00116Q8NCU8 138 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 BHLHE22Q8NFJ8 381 aaPredicted RBP5.57□□□□□ -1.52
USP54-217ENST00000498213 BAHD1Q8TBE0 780 aaPredicted RBP5.57□□□□□ -1.52
USP54-217ENST00000498213 KIF2CQ99661 725 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 ASPNQ9BXN1 380 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 LRRC3Q9BY71 257 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 FAM53CQ9NYF3 392 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 DUSP13Q9UII6 198 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 CTNND2Q9UQB3 1225 aa5.57□□□□□ -1.52
USP54-217ENST00000498213 RNF4P78317 190 aa5.56□□□□□ -1.52
USP54-217ENST00000498213 ARSHQ5FYA8 562 aa5.56□□□□□ -1.52
USP54-217ENST00000498213 GK5Q6ZS86 529 aa5.56□□□□□ -1.52
USP54-217ENST00000498213 KIAA0825Q8IV33 1275 aa5.56□□□□□ -1.52
USP54-217ENST00000498213 PPP1R13LQ8WUF5 828 aa5.56□□□□□ -1.52
USP54-217ENST00000498213 Q96M66 194 aa5.56□□□□□ -1.52
USP54-217ENST00000498213 KREMEN1Q96MU8 473 aa5.56□□□□□ -1.52
USP54-217ENST00000498213 DDX21Q9NR30 783 aaKnown RBP eCLIP5.56□□□□□ -1.52
USP54-217ENST00000498213 GMIPQ9P107 970 aa5.56□□□□□ -1.52
USP54-217ENST00000498213 MEGF6O75095 1541 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms