RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 DYRK3O43781 588 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 LMOD1P29536 600 aaPredicted RBP6.33□□□□□ -1.4
USF3-204ENST00000496826 TNNI2P48788 182 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 GALNT3Q14435 633 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 MYSM1Q5VVJ2 828 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 TRMT10CQ7L0Y3 403 aaKnown RBP6.33□□□□□ -1.4
USF3-204ENST00000496826 FAM177A1Q8N128 213 aaPredicted RBP6.33□□□□□ -1.4
USF3-204ENST00000496826 OSBPL9Q96SU4 736 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 CCDC134Q9H6E4 229 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 GDPD2Q9HCC8 539 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 RHPN2P1A8MT19 583 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 H3BMM5 538 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 GPC4O75487 556 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 MYO1DO94832 1006 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 C2CD6Q53TS8 623 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 OTUD7BQ6GQQ9 843 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 PYHIN1Q6K0P9 492 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 TYW1BQ6NUM6 668 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 EXOC8Q8IYI6 725 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 SECISBP2LQ93073 1101 aaKnown RBP6.33□□□□□ -1.4
USF3-204ENST00000496826 VPS33AQ96AX1 596 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 HDAC11Q96DB2 347 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 SNF8Q96H20 258 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 ASPNQ9BXN1 380 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 EMC3Q9P0I2 261 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 SLC12A7Q9Y666 1083 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 IFNAR2P48551 515 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 RUNX1T1Q06455 604 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 HDAC1Q13547 482 aaPredicted RBP6.33□□□□□ -1.4
USF3-204ENST00000496826 KRT72Q14CN4 511 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 ICE2Q659A1 982 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 TRIM68Q6AZZ1 485 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 C16orf87Q6PH81 154 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 FASTKD5Q7L8L6 764 aaKnown RBP6.33□□□□□ -1.4
USF3-204ENST00000496826 MDM1Q8TC05 714 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 SH3GL3Q99963 347 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 SH2B1Q9NRF2 756 aaPredicted RBP6.33□□□□□ -1.4
USF3-204ENST00000496826 CLASP2O75122 1294 aaKnown RBP6.33□□□□□ -1.4
USF3-204ENST00000496826 HSPA4LO95757 839 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 MYCP01106 439 aaPredicted RBP6.33□□□□□ -1.4
USF3-204ENST00000496826 RPN2P04844 631 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 HMOX1P09601 288 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 RFC4P35249 363 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 ASIC2Q16515 512 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 DUS1LQ6P1R4 473 aaKnown RBP6.33□□□□□ -1.4
USF3-204ENST00000496826 DTHD1Q6ZMT9 781 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 CHERPQ8IWX8 916 aaKnown RBP6.33□□□□□ -1.4
USF3-204ENST00000496826 GANCQ8TET4 914 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 RPAP3Q9H6T3 665 aaPredicted RBP6.33□□□□□ -1.4
USF3-204ENST00000496826 CCDC144AA2RUR9 1427 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 ZNF213O14771 459 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 WDR47O94967 919 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 RPSAP08865 295 aaKnown RBP6.33□□□□□ -1.4
USF3-204ENST00000496826 ZNF3P17036 446 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 GJA1P17302 382 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 ITGAXP20702 1163 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 RECQLP46063 649 aaPredicted RBP6.33□□□□□ -1.4
USF3-204ENST00000496826 DHX32Q7L7V1 743 aaKnown RBP6.33□□□□□ -1.4
USF3-204ENST00000496826 NME8Q8N427 588 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 TMIEQ8NEW7 156 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 ZSCAN18Q8TBC5 510 aaPredicted RBP6.33□□□□□ -1.4
USF3-204ENST00000496826 PRR23AA6NEV1 266 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 H3BRJ5 948 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 PSMA7O14818 248 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 ADCY3O60266 1144 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 FAM107AO95990 144 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 ECHS1P30084 290 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 STK3Q13188 491 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 BIRC3Q13489 604 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 ZNF280BQ86YH2 543 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 TRIM59Q8IWR1 403 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 KRT12Q99456 494 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 PDZRN3Q9UPQ7 1066 aa6.33□□□□□ -1.4
USF3-204ENST00000496826 DHX29Q7Z478 1369 aaKnown RBP6.32□□□□□ -1.4
USF3-204ENST00000496826 TBC1D8O95759 1140 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 RARSP54136 660 aaKnown RBP6.32□□□□□ -1.4
USF3-204ENST00000496826 NFYCQ13952 458 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 CYLC2Q14093 348 aaPredicted RBP6.32□□□□□ -1.4
USF3-204ENST00000496826 RCN1Q15293 331 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 RASIP1Q5U651 963 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 RHOT2Q8IXI1 618 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 OTULINQ96BN8 352 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 MMTAG2Q9BU76 263 aaKnown RBP6.32□□□□□ -1.4
USF3-204ENST00000496826 PRRG3Q9BZD7 231 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 MTMR7Q9Y216 660 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 CNTLNQ9NXG0 1405 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 NBPF26B4DH59 902 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 CLTAP09496 248 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 CCDC80Q76M96 950 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 NBPF15Q8N660 670 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 DPF3Q92784 378 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 TBC1D32Q96NH3 1257 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 THUMPD2Q9BTF0 503 aaKnown RBP6.32□□□□□ -1.4
USF3-204ENST00000496826 OLA1Q9NTK5 396 aaKnown RBP6.32□□□□□ -1.4
USF3-204ENST00000496826 LRP2BPQ9P2M1 347 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 UBA2Q9UBT2 640 aaPredicted RBP6.32□□□□□ -1.4
USF3-204ENST00000496826 ANGPTL2Q9UKU9 493 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 ZNF148Q9UQR1 794 aa6.32□□□□□ -1.4
USF3-204ENST00000496826 FARP1Q9Y4F1 1045 aaPredicted RBP6.32□□□□□ -1.4
USF3-204ENST00000496826 PAMP19021 973 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms