RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 IL17RBQ9NRM6 502 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 KIAA1024Q9UPX6 916 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PHLPP2Q6ZVD8 1323 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PPP6R2O75170 966 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TBCAO75347 108 aaKnown RBP11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PLCG1P19174 1290 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 KRT9P35527 623 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 EP400NLQ6ZTU2 488 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 PAGE5Q96GU1 130 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SLF1Q9BQI6 1058 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 ALDH8A1Q9H2A2 487 aaPredicted RBP11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 DDX25Q9UHL0 483 aaKnown RBP11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 MACROD2A1Z1Q3 448 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SRGNP10124 158 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 STAT3P40763 770 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SP8Q8IXZ3 490 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 SRPRBQ9Y5M8 271 aaKnown RBP11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 FHOD1Q9Y613 1164 aa11.9□□□□□ -0.5
MSH5-SAPCD1-207ENST00000493662 TULP2O00295 520 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 GNGT1P63211 74 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CKAP4Q07065 602 aaKnown RBP11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PPP2R5BQ15173 497 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 MLKLQ8NB16 471 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PRMT6Q96LA8 375 aaPredicted RBP11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 NOC4LQ9BVI4 516 aaKnown RBP11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 TMEM39BQ9GZU3 492 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 FAM208AQ9UK61 1670 aaKnown RBP11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 RPN1P04843 607 aaKnown RBP11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 HARSP12081 509 aaKnown RBP11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 RESP18Q5W5W9 173 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CC2D2BQ6DHV5 1058 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 ANKRD13CQ8N6S4 541 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 FLAD1Q8NFF5 587 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 TSG101Q99816 390 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 ARHGEF10LQ9HCE6 1279 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PI4KBQ9UBF8 816 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 GOLGA6BA6NDN3 693 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 FLOT1O75955 427 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 FMR1Q06787 632 aaKnown RBP eCLIP11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 FBXO11Q86XK2 927 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 RMND1Q9NWS8 449 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 LCMT1Q9UIC8 334 aa11.89□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 DDTLA6NHG4 134 aaPredicted RBP11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 RNF40O75150 1001 aa11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 SEC23AQ15436 765 aa11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CDC37Q16543 378 aaPredicted RBP11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 FAM83BQ5T0W9 1011 aa11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 ADGRF4Q8IZF3 695 aa11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 MICAL1Q8TDZ2 1067 aa11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 NAPGQ99747 312 aaPredicted RBP11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 FAM205AQ6ZU69 1335 aa11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 TESPA1A2RU30 521 aaPredicted RBP11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 F5H6K3 240 aa11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 TEX33O43247 280 aa11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 DPEP1P16444 411 aa11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 KLRC3Q07444 240 aa11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 EAPPQ56P03 285 aaPredicted RBP11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 EEPD1Q7L9B9 569 aa11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 DHX40Q8IX18 779 aaKnown RBP11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 SPATS2LQ9NUQ6 558 aaKnown RBP11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 FBXO2Q9UK22 296 aaPredicted RBP11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 SATB1Q01826 763 aa11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 HLTFQ14527 1009 aaKnown RBP eCLIP11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 SAMD7Q7Z3H4 446 aa11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CERS5Q8N5B7 392 aa11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 RTFDC1Q9BY42 306 aaPredicted RBP11.88□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 KIF4AO95239 1232 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 TM4SF1P30408 202 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 RAPGEF1Q13905 1077 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 TYW1BQ6NUM6 668 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 SRGAP1Q7Z6B7 1085 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CEP89Q96ST8 783 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PAGR1Q9BTK6 254 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 AGXT2Q9BYV1 514 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CASP14P31944 242 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 ECE1P42892 770 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 SPA17Q15506 151 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PODNQ7Z5L7 613 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PIGOQ8TEQ8 1089 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CAPS2Q9BXY5 557 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 FBXO28Q9NVF7 368 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PCDHB13Q9Y5F0 798 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 CNTNAP5Q8WYK1 1306 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 AKR1B15C9JRZ8 316 aaPredicted RBP11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 BACH1O14867 736 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 RPSAP08865 295 aaKnown RBP11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 H2AFXP16104 143 aaPredicted RBP11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 MORC3Q14149 939 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 ENGASEQ8NFI3 743 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PAIP2Q9BPZ3 127 aaKnown RBP11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 ZNF341Q9BYN7 854 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 MTMR4Q9NYA4 1195 aa11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 LUC7L2Q9Y383 392 aaKnown RBP11.87□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 ADAMTS3O15072 1205 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 NOP2P46087 812 aaKnown RBP11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 E2F5Q15329 346 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 PKN1Q16512 942 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 QRICH1Q2TAL8 776 aa11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 TTC19Q6DKK2 380 aaPredicted RBP11.86□□□□□ -0.51
MSH5-SAPCD1-207ENST00000493662 GPBP1Q86WP2 473 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms