RNA–Protein interactions for RNA: ENST00000493430.5

PTCD3-218, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 782 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-218ENST00000493430 NASPP49321 788 aaPredicted RBP5.38□□□□□ -1.55
PTCD3-218ENST00000493430 CASP7P55210 303 aa5.38□□□□□ -1.55
PTCD3-218ENST00000493430 NT5DC1Q5TFE4 455 aa5.38□□□□□ -1.55
PTCD3-218ENST00000493430 KIAA1211LQ6NV74 962 aa5.38□□□□□ -1.55
PTCD3-218ENST00000493430 NT5DC4Q86YG4 428 aa5.38□□□□□ -1.55
PTCD3-218ENST00000493430 SHDQ96IW2 340 aa5.38□□□□□ -1.55
PTCD3-218ENST00000493430 SPATA25Q9BR10 227 aa5.38□□□□□ -1.55
PTCD3-218ENST00000493430 BDH2Q9BUT1 245 aa5.38□□□□□ -1.55
PTCD3-218ENST00000493430 BCAS3Q9H6U6 928 aa5.38□□□□□ -1.55
PTCD3-218ENST00000493430 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.38□□□□□ -1.55
PTCD3-218ENST00000493430 FBLN5Q9UBX5 448 aa5.38□□□□□ -1.55
PTCD3-218ENST00000493430 AKT3Q9Y243 479 aa5.38□□□□□ -1.55
PTCD3-218ENST00000493430 C7orf72A4D263 438 aa5.37□□□□□ -1.55
PTCD3-218ENST00000493430 PRICKLE3O43900 615 aaPredicted RBP5.37□□□□□ -1.55
PTCD3-218ENST00000493430 GJA8P48165 433 aa5.37□□□□□ -1.55
PTCD3-218ENST00000493430 CACNB2Q08289 660 aaPredicted RBP5.37□□□□□ -1.55
PTCD3-218ENST00000493430 RTP5Q14D33 572 aa5.37□□□□□ -1.55
PTCD3-218ENST00000493430 UBXN11Q5T124 520 aa5.37□□□□□ -1.55
PTCD3-218ENST00000493430 WWC2Q6AWC2 1192 aa5.37□□□□□ -1.55
PTCD3-218ENST00000493430 POMZP3Q6PJE2 187 aa5.37□□□□□ -1.55
PTCD3-218ENST00000493430 VHLLQ6RSH7 139 aa5.37□□□□□ -1.55
PTCD3-218ENST00000493430 SMARCC2Q8TAQ2 1214 aa5.37□□□□□ -1.55
PTCD3-218ENST00000493430 SEC16BQ96JE7 1060 aa5.37□□□□□ -1.55
PTCD3-218ENST00000493430 APBA2Q99767 749 aa5.37□□□□□ -1.55
PTCD3-218ENST00000493430 JAG2Q9Y219 1238 aa5.37□□□□□ -1.55
PTCD3-218ENST00000493430 BAZ1BQ9UIG0 1483 aaKnown RBP5.37□□□□□ -1.55
PTCD3-218ENST00000493430 PEG3Q9GZU2 1588 aa5.37□□□□□ -1.55
PTCD3-218ENST00000493430 FUCA1P04066 466 aa5.36□□□□□ -1.55
PTCD3-218ENST00000493430 ADRB1P08588 477 aa5.36□□□□□ -1.55
PTCD3-218ENST00000493430 HDLBPQ00341 1268 aaKnown RBP5.36□□□□□ -1.55
PTCD3-218ENST00000493430 DLX2Q07687 328 aaPredicted RBP5.36□□□□□ -1.55
PTCD3-218ENST00000493430 SPATS1Q496A3 300 aa5.36□□□□□ -1.55
PTCD3-218ENST00000493430 C9orf131Q5VYM1 1079 aa5.36□□□□□ -1.55
PTCD3-218ENST00000493430 CARFQ8N187 725 aa5.36□□□□□ -1.55
PTCD3-218ENST00000493430 CRACR2BQ8N4Y2 399 aaPredicted RBP5.36□□□□□ -1.55
PTCD3-218ENST00000493430 EMC9Q9Y3B6 208 aa5.36□□□□□ -1.55
PTCD3-218ENST00000493430 NOP56O00567 594 aaKnown RBP5.35□□□□□ -1.55
PTCD3-218ENST00000493430 KCNH1O95259 989 aa5.35□□□□□ -1.55
PTCD3-218ENST00000493430 NTRK1P04629 796 aa5.35□□□□□ -1.55
PTCD3-218ENST00000493430 NAT2P11245 290 aa5.35□□□□□ -1.55
PTCD3-218ENST00000493430 PLS3P13797 630 aa5.35□□□□□ -1.55
PTCD3-218ENST00000493430 ZNF143P52747 638 aaPredicted RBP5.35□□□□□ -1.55
PTCD3-218ENST00000493430 TTLL7Q6ZT98 887 aa5.35□□□□□ -1.55
PTCD3-218ENST00000493430 ZNF513Q8N8E2 541 aaPredicted RBP5.35□□□□□ -1.55
PTCD3-218ENST00000493430 BVESQ8NE79 360 aa5.35□□□□□ -1.55
PTCD3-218ENST00000493430 COPS5Q92905 334 aa5.35□□□□□ -1.55
PTCD3-218ENST00000493430 BORCS6Q96GS4 357 aa5.35□□□□□ -1.55
PTCD3-218ENST00000493430 NOX5Q96PH1 765 aa5.35□□□□□ -1.55
PTCD3-218ENST00000493430 MMP19Q99542 508 aa5.35□□□□□ -1.55
PTCD3-218ENST00000493430 NTMQ9P121 344 aa5.35□□□□□ -1.55
PTCD3-218ENST00000493430 CLEC1BQ9P126 229 aa5.35□□□□□ -1.55
PTCD3-218ENST00000493430 APEX2Q9UBZ4 518 aa5.35□□□□□ -1.55
PTCD3-218ENST00000493430 CNOT11Q9UKZ1 510 aaKnown RBP5.35□□□□□ -1.55
PTCD3-218ENST00000493430 STRIP2Q9ULQ0 834 aa5.35□□□□□ -1.55
PTCD3-218ENST00000493430 NOBOXO60393 691 aa5.34□□□□□ -1.55
PTCD3-218ENST00000493430 SARSP49591 514 aaKnown RBP5.34□□□□□ -1.55
PTCD3-218ENST00000493430 GJA9P57773 515 aa5.34□□□□□ -1.55
PTCD3-218ENST00000493430 NFKB2Q00653 900 aa5.34□□□□□ -1.55
PTCD3-218ENST00000493430 SCRN1Q12765 414 aa5.34□□□□□ -1.55
PTCD3-218ENST00000493430 EFEMP1Q12805 493 aa5.34□□□□□ -1.55
PTCD3-218ENST00000493430 FERMT3Q86UX7 667 aa5.34□□□□□ -1.55
PTCD3-218ENST00000493430 FAM169BQ8N8A8 192 aa5.34□□□□□ -1.55
PTCD3-218ENST00000493430 PLEKHO2Q8TD55 490 aa5.34□□□□□ -1.55
PTCD3-218ENST00000493430 ZBTB8AQ96BR9 441 aa5.34□□□□□ -1.55
PTCD3-218ENST00000493430 PCDH18Q9HCL0 1135 aa5.34□□□□□ -1.55
PTCD3-218ENST00000493430 GPRC5CQ9NQ84 441 aa5.34□□□□□ -1.55
PTCD3-218ENST00000493430 CYP26B1Q9NR63 512 aa5.34□□□□□ -1.55
PTCD3-218ENST00000493430 SIT1Q9Y3P8 196 aa5.34□□□□□ -1.55
PTCD3-218ENST00000493430 K7ESM1 405 aa5.33□□□□□ -1.56
PTCD3-218ENST00000493430 SMARCA5O60264 1052 aaPredicted RBP5.33□□□□□ -1.56
PTCD3-218ENST00000493430 CYP2C8P10632 490 aa5.33□□□□□ -1.56
PTCD3-218ENST00000493430 KRTAP10-2P60368 255 aa5.33□□□□□ -1.56
PTCD3-218ENST00000493430 NCAPHQ15003 741 aa5.33□□□□□ -1.56
PTCD3-218ENST00000493430 DCP2Q8IU60 420 aaKnown RBP5.33□□□□□ -1.56
PTCD3-218ENST00000493430 LINC00482Q8N8I6 264 aa5.33□□□□□ -1.56
PTCD3-218ENST00000493430 DDX1Q92499 740 aaKnown RBP5.33□□□□□ -1.56
PTCD3-218ENST00000493430 DPF3Q92784 378 aa5.33□□□□□ -1.56
PTCD3-218ENST00000493430 PPP1R14AQ96A00 147 aa5.33□□□□□ -1.56
PTCD3-218ENST00000493430 MRRFQ96E11 262 aaKnown RBP5.33□□□□□ -1.56
PTCD3-218ENST00000493430 DDX11Q96FC9 970 aa5.33□□□□□ -1.56
PTCD3-218ENST00000493430 AP5M1Q9H0R1 490 aa5.33□□□□□ -1.56
PTCD3-218ENST00000493430 SPATA6Q9NWH7 488 aaPredicted RBP5.33□□□□□ -1.56
PTCD3-218ENST00000493430 MARCH2Q9P0N8 246 aa5.33□□□□□ -1.56
PTCD3-218ENST00000493430 NCAPD3P42695 1498 aa5.32□□□□□ -1.56
PTCD3-218ENST00000493430 ERCC6Q03468 1493 aa5.32□□□□□ -1.56
PTCD3-218ENST00000493430 THBDP07204 575 aa5.32□□□□□ -1.56
PTCD3-218ENST00000493430 SMAD4Q13485 552 aaKnown RBP5.32□□□□□ -1.56
PTCD3-218ENST00000493430 MBLAC2Q68D91 279 aa5.32□□□□□ -1.56
PTCD3-218ENST00000493430 GTF2IRD2BQ6EKJ0 949 aa5.32□□□□□ -1.56
PTCD3-218ENST00000493430 IQCEQ6IPM2 695 aa5.32□□□□□ -1.56
PTCD3-218ENST00000493430 ETV3LQ6ZN32 361 aa5.32□□□□□ -1.56
PTCD3-218ENST00000493430 GTF2IRD2Q86UP8 949 aa5.32□□□□□ -1.56
PTCD3-218ENST00000493430 GGNQ86UU5 652 aa5.32□□□□□ -1.56
PTCD3-218ENST00000493430 ANAPC16Q96DE5 110 aa5.32□□□□□ -1.56
PTCD3-218ENST00000493430 LNPKQ9C0E8 428 aa5.32□□□□□ -1.56
PTCD3-218ENST00000493430 TGIF2Q9GZN2 237 aa5.32□□□□□ -1.56
PTCD3-218ENST00000493430 NKX2-4Q9H2Z4 354 aa5.32□□□□□ -1.56
PTCD3-218ENST00000493430 BTG4Q9NY30 223 aa5.32□□□□□ -1.56
PTCD3-218ENST00000493430 INPP5FQ9Y2H2 1132 aa5.32□□□□□ -1.56
PTCD3-218ENST00000493430 C22orf46C9J442 243 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms