RNA–Protein interactions for RNA: ENST00000492512.1

GPNMB-213, Transcript of glycoprotein nmb, humanhuman

TSL 3

Gene GPNMB, Length 447 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-213ENST00000492512 DCAF4Q8WV16 495 aa16.2■□□□□ 0.18
GPNMB-213ENST00000492512 ZBED2Q9BTP6 218 aa16.2■□□□□ 0.18
GPNMB-213ENST00000492512 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.2■□□□□ 0.18
GPNMB-213ENST00000492512 FAM86C2PA6NEL3 165 aa16.19■□□□□ 0.18
GPNMB-213ENST00000492512 A6NJR5 290 aa16.19■□□□□ 0.18
GPNMB-213ENST00000492512 RANBP6O60518 1105 aaKnown RBP16.19■□□□□ 0.18
GPNMB-213ENST00000492512 LPXNO60711 386 aa16.19■□□□□ 0.18
GPNMB-213ENST00000492512 CTDSPL2Q05D32 466 aa16.19■□□□□ 0.18
GPNMB-213ENST00000492512 SYDE2Q5VT97 1194 aa16.19■□□□□ 0.18
GPNMB-213ENST00000492512 TTBK2Q6IQ55 1244 aa16.19■□□□□ 0.18
GPNMB-213ENST00000492512 SLC30A10Q6XR72 485 aa16.19■□□□□ 0.18
GPNMB-213ENST00000492512 CCDC155Q8N6L0 562 aa16.19■□□□□ 0.18
GPNMB-213ENST00000492512 KHSRPQ92945 711 aaKnown RBP eCLIP16.19■□□□□ 0.18
GPNMB-213ENST00000492512 INCENPQ9NQS7 918 aa16.19■□□□□ 0.18
GPNMB-213ENST00000492512 LMCD1Q9NZU5 365 aa16.19■□□□□ 0.18
GPNMB-213ENST00000492512 LCHNA4D1U4 455 aa16.18■□□□□ 0.18
GPNMB-213ENST00000492512 WDR5P61964 334 aaKnown RBP16.18■□□□□ 0.18
GPNMB-213ENST00000492512 PTGISQ16647 500 aa16.18■□□□□ 0.18
GPNMB-213ENST00000492512 BTNL9Q6UXG8 535 aa16.18■□□□□ 0.18
GPNMB-213ENST00000492512 RNF207Q6ZRF8 634 aa16.18■□□□□ 0.18
GPNMB-213ENST00000492512 AFAP1L1Q8TED9 768 aa16.18■□□□□ 0.18
GPNMB-213ENST00000492512 GDPD5Q8WTR4 605 aa16.18■□□□□ 0.18
GPNMB-213ENST00000492512 COPS5Q92905 334 aa16.18■□□□□ 0.18
GPNMB-213ENST00000492512 FSD1Q9BTV5 496 aa16.18■□□□□ 0.18
GPNMB-213ENST00000492512 C11orf16Q9NQ32 467 aa16.18■□□□□ 0.18
GPNMB-213ENST00000492512 TXNP10599 105 aaKnown RBP16.17■□□□□ 0.18
GPNMB-213ENST00000492512 ZMYM1Q5SVZ6 1142 aa16.17■□□□□ 0.18
GPNMB-213ENST00000492512 CAGE1Q8TC20 777 aa16.17■□□□□ 0.18
GPNMB-213ENST00000492512 GPCPD1Q9NPB8 672 aa16.17■□□□□ 0.18
GPNMB-213ENST00000492512 B4DLN1 442 aa16.16■□□□□ 0.18
GPNMB-213ENST00000492512 PI4K2BG5E9Z4 385 aa16.16■□□□□ 0.18
GPNMB-213ENST00000492512 EDNRBP24530 442 aa16.16■□□□□ 0.18
GPNMB-213ENST00000492512 MRPL12P52815 198 aaKnown RBP16.16■□□□□ 0.18
GPNMB-213ENST00000492512 RPS6P62753 249 aaKnown RBP16.16■□□□□ 0.18
GPNMB-213ENST00000492512 TMCO2Q7Z6W1 182 aaPredicted RBP16.16■□□□□ 0.18
GPNMB-213ENST00000492512 DNERQ8NFT8 737 aa16.16■□□□□ 0.18
GPNMB-213ENST00000492512 CLEC4DQ8WXI8 215 aa16.16■□□□□ 0.18
GPNMB-213ENST00000492512 CD320Q9NPF0 282 aa16.16■□□□□ 0.18
GPNMB-213ENST00000492512 PNMA2Q9UL42 364 aa16.16■□□□□ 0.18
GPNMB-213ENST00000492512 MTUS1Q9ULD2 1270 aa16.16■□□□□ 0.18
GPNMB-213ENST00000492512 FRMPD2Q68DX3 1309 aaPredicted RBP16.16■□□□□ 0.18
GPNMB-213ENST00000492512 SIP14410 1827 aa16.15■□□□□ 0.18
GPNMB-213ENST00000492512 SELPP16109 830 aa16.15■□□□□ 0.18
GPNMB-213ENST00000492512 NOVP48745 357 aa16.15■□□□□ 0.18
GPNMB-213ENST00000492512 DEFB103AP81534 67 aa16.15■□□□□ 0.18
GPNMB-213ENST00000492512 CNKSR3Q6P9H4 555 aa16.15■□□□□ 0.18
GPNMB-213ENST00000492512 LRRC8DQ7L1W4 858 aa16.15■□□□□ 0.18
GPNMB-213ENST00000492512 TGS1Q96RS0 853 aaKnown RBP16.15■□□□□ 0.18
GPNMB-213ENST00000492512 DCTPP1Q9H773 170 aa16.15■□□□□ 0.18
GPNMB-213ENST00000492512 UBE2ZQ9H832 354 aaPredicted RBP16.15■□□□□ 0.18
GPNMB-213ENST00000492512 TOMM22Q9NS69 142 aa16.15■□□□□ 0.18
GPNMB-213ENST00000492512 TTC41PQ6P2S7 1318 aa16.15■□□□□ 0.18
GPNMB-213ENST00000492512 ORC4O43929 436 aa16.14■□□□□ 0.17
GPNMB-213ENST00000492512 PARNO95453 639 aaKnown RBP16.14■□□□□ 0.17
GPNMB-213ENST00000492512 TOP1P11387 765 aaKnown RBP16.14■□□□□ 0.17
GPNMB-213ENST00000492512 GDF6Q6KF10 455 aaPredicted RBP16.14■□□□□ 0.17
GPNMB-213ENST00000492512 CRBNQ96SW2 442 aa16.14■□□□□ 0.17
GPNMB-213ENST00000492512 RAD9AQ99638 391 aa16.14■□□□□ 0.17
GPNMB-213ENST00000492512 TMEM47Q9BQJ4 181 aa16.14■□□□□ 0.17
GPNMB-213ENST00000492512 SUGCTQ9HAC7 445 aa16.14■□□□□ 0.17
GPNMB-213ENST00000492512 ANAPC4Q9UJX5 808 aa16.14■□□□□ 0.17
GPNMB-213ENST00000492512 FOXP2O15409 715 aa16.13■□□□□ 0.17
GPNMB-213ENST00000492512 ARIH2O95376 493 aa16.13■□□□□ 0.17
GPNMB-213ENST00000492512 GJB5O95377 273 aa16.13■□□□□ 0.17
GPNMB-213ENST00000492512 ERVK-21P61565 698 aa16.13■□□□□ 0.17
GPNMB-213ENST00000492512 GPNMBQ14956 572 aa16.13■□□□□ 0.17
GPNMB-213ENST00000492512 RRP12Q5JTH9 1297 aaKnown RBP16.13■□□□□ 0.17
GPNMB-213ENST00000492512 SESTD1Q86VW0 696 aa16.13■□□□□ 0.17
GPNMB-213ENST00000492512 PI4K2BQ8TCG2 481 aa16.13■□□□□ 0.17
GPNMB-213ENST00000492512 AFG1LQ8WV93 481 aa16.13■□□□□ 0.17
GPNMB-213ENST00000492512 CTAGE1Q96RT6 745 aa16.13■□□□□ 0.17
GPNMB-213ENST00000492512 KIAA1217Q5T5P2 1943 aa16.13■□□□□ 0.17
GPNMB-213ENST00000492512 WDR19Q8NEZ3 1342 aa16.13■□□□□ 0.17
GPNMB-213ENST00000492512 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.12■□□□□ 0.17
GPNMB-213ENST00000492512 ABHD14A-ACY1A0A1B0GW23 586 aa16.12■□□□□ 0.17
GPNMB-213ENST00000492512 PRR33A8MZF0 331 aa16.12■□□□□ 0.17
GPNMB-213ENST00000492512 EFCAB14O75071 495 aa16.12■□□□□ 0.17
GPNMB-213ENST00000492512 GH1P01241 217 aa16.12■□□□□ 0.17
GPNMB-213ENST00000492512 CXCL10P02778 98 aa16.12■□□□□ 0.17
GPNMB-213ENST00000492512 MMP3P08254 477 aa16.12■□□□□ 0.17
GPNMB-213ENST00000492512 KCNA5P22460 613 aa16.12■□□□□ 0.17
GPNMB-213ENST00000492512 C20orf194Q5TEA3 1177 aa16.12■□□□□ 0.17
GPNMB-213ENST00000492512 CHST3Q7LGC8 479 aa16.12■□□□□ 0.17
GPNMB-213ENST00000492512 FAM178BQ8IXR5 827 aa16.12■□□□□ 0.17
GPNMB-213ENST00000492512 GJD3Q8N144 294 aa16.12■□□□□ 0.17
GPNMB-213ENST00000492512 LINC01553A4QN01 128 aa16.11■□□□□ 0.17
GPNMB-213ENST00000492512 NBNO60934 754 aa16.11■□□□□ 0.17
GPNMB-213ENST00000492512 PDHBP11177 359 aa16.11■□□□□ 0.17
GPNMB-213ENST00000492512 CKBP12277 381 aa16.11■□□□□ 0.17
GPNMB-213ENST00000492512 CASTP20810 708 aaKnown RBP16.11■□□□□ 0.17
GPNMB-213ENST00000492512 SSTR3P32745 418 aaPredicted RBP16.11■□□□□ 0.17
GPNMB-213ENST00000492512 RBL2Q08999 1139 aa16.11■□□□□ 0.17
GPNMB-213ENST00000492512 IKBKEQ14164 716 aa16.11■□□□□ 0.17
GPNMB-213ENST00000492512 LY6KQ17RY6 165 aa16.11■□□□□ 0.17
GPNMB-213ENST00000492512 LEXMQ3ZCV2 418 aa16.11■□□□□ 0.17
GPNMB-213ENST00000492512 USH1GQ495M9 461 aa16.11■□□□□ 0.17
GPNMB-213ENST00000492512 VPS53Q5VIR6 699 aa16.11■□□□□ 0.17
GPNMB-213ENST00000492512 FAM117BQ6P1L5 589 aa16.11■□□□□ 0.17
GPNMB-213ENST00000492512 CCDC62Q6P9F0 684 aa16.11■□□□□ 0.17
GPNMB-213ENST00000492512 SEPT14Q6ZU15 432 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms