RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 KINO60870 393 aaKnown RBP13.23□□□□□ -0.29
TRIM40-208ENST00000489892 SLC10A3P09131 477 aa13.23□□□□□ -0.29
TRIM40-208ENST00000489892 PTPREP23469 700 aa13.23□□□□□ -0.29
TRIM40-208ENST00000489892 SREBF1P36956 1147 aa13.23□□□□□ -0.29
TRIM40-208ENST00000489892 TXLNAP40222 546 aa13.23□□□□□ -0.29
TRIM40-208ENST00000489892 MOB2Q70IA6 237 aa13.23□□□□□ -0.29
TRIM40-208ENST00000489892 CPXCR1Q8N123 301 aa13.23□□□□□ -0.29
TRIM40-208ENST00000489892 CHST13Q8NET6 341 aa13.23□□□□□ -0.29
TRIM40-208ENST00000489892 CHAMP1Q96JM3 812 aa13.23□□□□□ -0.29
TRIM40-208ENST00000489892 ANO3Q9BYT9 981 aa13.23□□□□□ -0.29
TRIM40-208ENST00000489892 FTOQ9C0B1 505 aaKnown RBP eCLIP13.23□□□□□ -0.29
TRIM40-208ENST00000489892 PCDHA7Q9UN72 937 aa13.23□□□□□ -0.29
TRIM40-208ENST00000489892 SRPRBQ9Y5M8 271 aaKnown RBP13.23□□□□□ -0.29
TRIM40-208ENST00000489892 ZNF536O15090 1300 aa13.22□□□□□ -0.29
TRIM40-208ENST00000489892 MEIS2O14770 477 aa13.22□□□□□ -0.29
TRIM40-208ENST00000489892 CCNT1O60563 726 aaKnown RBP13.22□□□□□ -0.29
TRIM40-208ENST00000489892 CFBP00751 764 aa13.22□□□□□ -0.29
TRIM40-208ENST00000489892 ALAS1P13196 640 aa13.22□□□□□ -0.29
TRIM40-208ENST00000489892 MCM7P33993 719 aa13.22□□□□□ -0.29
TRIM40-208ENST00000489892 LONP1P36776 959 aaKnown RBP13.22□□□□□ -0.29
TRIM40-208ENST00000489892 SNAP25P60880 206 aa13.22□□□□□ -0.29
TRIM40-208ENST00000489892 FAM160A1Q05DH4 1040 aa13.22□□□□□ -0.29
TRIM40-208ENST00000489892 PTGDRQ13258 359 aa13.22□□□□□ -0.29
TRIM40-208ENST00000489892 UBE2SQ16763 222 aa13.22□□□□□ -0.29
TRIM40-208ENST00000489892 TMEM266Q2M3C6 531 aa13.22□□□□□ -0.29
TRIM40-208ENST00000489892 LETM2Q2VYF4 491 aa13.22□□□□□ -0.29
TRIM40-208ENST00000489892 SNRNP48Q6IEG0 339 aaKnown RBP13.22□□□□□ -0.29
TRIM40-208ENST00000489892 REM2Q8IYK8 340 aaPredicted RBP13.22□□□□□ -0.29
TRIM40-208ENST00000489892 AK8Q96MA6 479 aa13.22□□□□□ -0.29
TRIM40-208ENST00000489892 ACAD9Q9H845 621 aa13.22□□□□□ -0.29
TRIM40-208ENST00000489892 RAVER2Q9HCJ3 691 aaKnown RBP13.22□□□□□ -0.29
TRIM40-208ENST00000489892 ZCCHC17Q9NP64 241 aaKnown RBP13.22□□□□□ -0.29
TRIM40-208ENST00000489892 RNF186Q9NXI6 227 aa13.22□□□□□ -0.29
TRIM40-208ENST00000489892 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.22□□□□□ -0.29
TRIM40-208ENST00000489892 HOOK1Q9UJC3 728 aaKnown RBP13.22□□□□□ -0.29
TRIM40-208ENST00000489892 PFASO15067 1338 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 FAM205CA6NFA0 338 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 CTAGE5O15320 804 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 ZNF500O60304 480 aaPredicted RBP13.21□□□□□ -0.29
TRIM40-208ENST00000489892 GADD45BO75293 160 aaPredicted RBP13.21□□□□□ -0.29
TRIM40-208ENST00000489892 SLC25A27O95847 323 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 OR52Z1P0C646 297 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 MARCKSP29966 332 aaPredicted RBP13.21□□□□□ -0.29
TRIM40-208ENST00000489892 STAT3P40763 770 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 GCLCP48506 637 aaPredicted RBP13.21□□□□□ -0.29
TRIM40-208ENST00000489892 HSD17B4P51659 736 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 ARHGAP4P98171 946 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 ZNF174Q15697 407 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 EARS2Q5JPH6 523 aaKnown RBP13.21□□□□□ -0.29
TRIM40-208ENST00000489892 TREML2Q5T2D2 321 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 SPRYD7Q5W111 196 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 XRRA1Q6P2D8 792 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 USP17L6PQ6QN14 398 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 DTHD1Q6ZMT9 781 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 ANKRD23Q86SG2 305 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 CCAR1Q8IX12 1150 aaKnown RBP13.21□□□□□ -0.29
TRIM40-208ENST00000489892 SLFN12Q8IYM2 578 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 FSIP1Q8NA03 581 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 REPS2Q8NFH8 660 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 CNKSR2Q8WXI2 1034 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 PGBD1Q96JS3 809 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 AGBL1Q96MI9 1066 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 TRERF1Q96PN7 1200 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 ASCC2Q9H1I8 757 aaPredicted RBP13.21□□□□□ -0.29
TRIM40-208ENST00000489892 RNF146Q9NTX7 359 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 USP25Q9UHP3 1055 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 ZNF214Q9UL59 606 aaPredicted RBP13.21□□□□□ -0.29
TRIM40-208ENST00000489892 STK24Q9Y6E0 443 aa13.21□□□□□ -0.29
TRIM40-208ENST00000489892 RBBP6Q7Z6E9 1792 aaKnown RBP13.21□□□□□ -0.29
TRIM40-208ENST00000489892 CYP3A7-CYP3A51PA0A087WV96 503 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 CCL15-CCL14A0A0B4J2E2 113 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 MANSC4A6NHS7 340 aaPredicted RBP13.2□□□□□ -0.3
TRIM40-208ENST00000489892 B4DLN1 442 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 TBX3O15119 743 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 MARCH6O60337 910 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 TPM3P06753 285 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 TPM2P07951 284 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 CYP3A4P08684 503 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 CYP3A7P24462 503 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 INHBEP58166 350 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 HERVK_113P62684 666 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 CCNA1P78396 465 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 SETQ01105 290 aaPredicted RBP13.2□□□□□ -0.3
TRIM40-208ENST00000489892 CALCRLQ16602 461 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 CCL15Q16663 113 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 AXDND1Q5T1B0 1012 aaPredicted RBP13.2□□□□□ -0.3
TRIM40-208ENST00000489892 RNF207Q6ZRF8 634 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 RASAL3Q86YV0 1011 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 RIOX2Q8IUF8 465 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 PARK7Q99497 189 aaKnown RBP13.2□□□□□ -0.3
TRIM40-208ENST00000489892 MPHOSPH6Q99547 160 aaKnown RBP13.2□□□□□ -0.3
TRIM40-208ENST00000489892 TMEM260Q9NX78 707 aa13.2□□□□□ -0.3
TRIM40-208ENST00000489892 DDX25Q9UHL0 483 aaKnown RBP13.2□□□□□ -0.3
TRIM40-208ENST00000489892 FBXO2Q9UK22 296 aaPredicted RBP13.2□□□□□ -0.3
TRIM40-208ENST00000489892 RLFQ13129 1914 aa13.19□□□□□ -0.3
TRIM40-208ENST00000489892 A0A0G2JMZ2 1700 aa13.19□□□□□ -0.3
TRIM40-208ENST00000489892 FAM237AA0A1B0GTK4 181 aa13.19□□□□□ -0.3
TRIM40-208ENST00000489892 OPLAHO14841 1288 aa13.19□□□□□ -0.3
TRIM40-208ENST00000489892 SLC26A4O43511 780 aa13.19□□□□□ -0.3
TRIM40-208ENST00000489892 CIITAP33076 1130 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms