RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 FUT2Q10981 343 aa16.1■□□□□ 0.17
SYNE1-226ENST00000488376 DUSP28Q4G0W2 176 aa16.1■□□□□ 0.17
SYNE1-226ENST00000488376 SH3RF1Q7Z6J0 888 aa16.1■□□□□ 0.17
SYNE1-226ENST00000488376 NSUN6Q8TEA1 469 aaKnown RBP16.1■□□□□ 0.17
SYNE1-226ENST00000488376 TSEN34Q9BSV6 310 aaKnown RBP16.1■□□□□ 0.17
SYNE1-226ENST00000488376 BAZ2BQ9UIF8 2168 aaKnown RBP16.09■□□□□ 0.17
SYNE1-226ENST00000488376 LOC102724159A0A0B4J2E5 919 aa16.09■□□□□ 0.17
SYNE1-226ENST00000488376 CASTP20810 708 aaKnown RBP16.09■□□□□ 0.17
SYNE1-226ENST00000488376 RPS6KB1P23443 525 aa16.09■□□□□ 0.17
SYNE1-226ENST00000488376 MAGEA10P43363 369 aaPredicted RBP16.09■□□□□ 0.17
SYNE1-226ENST00000488376 TLE2Q04725 743 aa16.09■□□□□ 0.17
SYNE1-226ENST00000488376 PWP2Q15269 919 aaKnown RBP16.09■□□□□ 0.17
SYNE1-226ENST00000488376 FSCN1Q16658 493 aaKnown RBP16.09■□□□□ 0.17
SYNE1-226ENST00000488376 ARHGEF16Q5VV41 709 aa16.09■□□□□ 0.17
SYNE1-226ENST00000488376 BLOC1S2Q6QNY1 142 aa16.09■□□□□ 0.17
SYNE1-226ENST00000488376 CXCL17Q6UXB2 119 aa16.09■□□□□ 0.17
SYNE1-226ENST00000488376 FCHSD1Q86WN1 690 aa16.09■□□□□ 0.17
SYNE1-226ENST00000488376 GPKOWQ92917 476 aaPredicted RBP eCLIP16.09■□□□□ 0.17
SYNE1-226ENST00000488376 BRF1Q92994 677 aa16.09■□□□□ 0.17
SYNE1-226ENST00000488376 LZTS2Q9BRK4 669 aa16.09■□□□□ 0.17
SYNE1-226ENST00000488376 STARD7Q9NQZ5 370 aa16.09■□□□□ 0.17
SYNE1-226ENST00000488376 CNTNAP5Q8WYK1 1306 aa16.09■□□□□ 0.17
SYNE1-226ENST00000488376 CEP290O15078 2479 aa16.08■□□□□ 0.17
SYNE1-226ENST00000488376 TRIM43BA6NCK2 446 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 MOXD2PA6NHM9 499 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 GOLGA8AA7E2F4 631 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 GOLGA8BA8MQT2 603 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 GCOM1H8Y6P7 765 aaPredicted RBP16.08■□□□□ 0.16
SYNE1-226ENST00000488376 ZBTB43O43298 467 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 RGS20O76081 388 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 NR3C2P08235 984 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 HMGB1P09429 215 aaKnown RBP16.08■□□□□ 0.16
SYNE1-226ENST00000488376 POLR2MP0CAP2 368 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 SMARCA1P28370 1054 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 GNAQP50148 359 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 MDM2Q00987 491 aaPredicted RBP16.08■□□□□ 0.16
SYNE1-226ENST00000488376 RTN1Q16799 776 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 LY6KQ17RY6 165 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 CCDC62Q6P9F0 684 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 USP17L6PQ6QN14 398 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 SEPT14Q6ZU15 432 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 TRIM43Q96BQ3 446 aaPredicted RBP16.08■□□□□ 0.16
SYNE1-226ENST00000488376 GDF15Q99988 308 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 PDCD2LQ9BRP1 358 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 MAF1Q9H063 256 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 AP5M1Q9H0R1 490 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 SPC25Q9HBM1 224 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 PDLIM7Q9NR12 457 aa16.08■□□□□ 0.16
SYNE1-226ENST00000488376 NAP1L2Q9ULW6 460 aaPredicted RBP16.08■□□□□ 0.16
SYNE1-226ENST00000488376 RANBP2P49792 3224 aaKnown RBP16.08■□□□□ 0.16
SYNE1-226ENST00000488376 MYH6P13533 1939 aa16.07■□□□□ 0.16
SYNE1-226ENST00000488376 PQBP1O60828 265 aaKnown RBP16.07■□□□□ 0.16
SYNE1-226ENST00000488376 TXNP10599 105 aaKnown RBP16.07■□□□□ 0.16
SYNE1-226ENST00000488376 MYCLP12524 364 aaPredicted RBP16.07■□□□□ 0.16
SYNE1-226ENST00000488376 ITGB8P26012 769 aa16.07■□□□□ 0.16
SYNE1-226ENST00000488376 PSMC6P62333 389 aa16.07■□□□□ 0.16
SYNE1-226ENST00000488376 PGM5Q15124 567 aa16.07■□□□□ 0.16
SYNE1-226ENST00000488376 PPP2R5BQ15173 497 aa16.07■□□□□ 0.16
SYNE1-226ENST00000488376 C1orf53Q5VUE5 145 aa16.07■□□□□ 0.16
SYNE1-226ENST00000488376 TYW1BQ6NUM6 668 aa16.07■□□□□ 0.16
SYNE1-226ENST00000488376 SYNE3Q6ZMZ3 975 aa16.07■□□□□ 0.16
SYNE1-226ENST00000488376 PCSK9Q8NBP7 692 aaKnown RBP16.07■□□□□ 0.16
SYNE1-226ENST00000488376 SCFD2Q8WU76 684 aa16.07■□□□□ 0.16
SYNE1-226ENST00000488376 PPP1R13LQ8WUF5 828 aa16.07■□□□□ 0.16
SYNE1-226ENST00000488376 LARP6Q9BRS8 491 aaKnown RBP16.07■□□□□ 0.16
SYNE1-226ENST00000488376 UPF3BQ9BZI7 483 aaKnown RBP16.07■□□□□ 0.16
SYNE1-226ENST00000488376 PRDM5Q9NQX1 630 aaPredicted RBP16.07■□□□□ 0.16
SYNE1-226ENST00000488376 SEC63Q9UGP8 760 aaKnown RBP16.07■□□□□ 0.16
SYNE1-226ENST00000488376 GRIN2DO15399 1336 aa16.07■□□□□ 0.16
SYNE1-226ENST00000488376 MEIS2O14770 477 aa16.06■□□□□ 0.16
SYNE1-226ENST00000488376 PPFIA3O75145 1194 aa16.06■□□□□ 0.16
SYNE1-226ENST00000488376 ADD1P35611 737 aaKnown RBP16.06■□□□□ 0.16
SYNE1-226ENST00000488376 FGD1P98174 961 aa16.06■□□□□ 0.16
SYNE1-226ENST00000488376 TOB2Q14106 344 aaPredicted RBP16.06■□□□□ 0.16
SYNE1-226ENST00000488376 STXBP2Q15833 593 aa16.06■□□□□ 0.16
SYNE1-226ENST00000488376 UBE2SQ16763 222 aa16.06■□□□□ 0.16
SYNE1-226ENST00000488376 WWC2Q6AWC2 1192 aa16.06■□□□□ 0.16
SYNE1-226ENST00000488376 HEATR3Q7Z4Q2 680 aa16.06■□□□□ 0.16
SYNE1-226ENST00000488376 OR6J1Q8NGC5 347 aa16.06■□□□□ 0.16
SYNE1-226ENST00000488376 IWS1Q96ST2 819 aa16.06■□□□□ 0.16
SYNE1-226ENST00000488376 AGXT2Q9BYV1 514 aa16.06■□□□□ 0.16
SYNE1-226ENST00000488376 ZSWIM6Q9HCJ5 1215 aa16.06■□□□□ 0.16
SYNE1-226ENST00000488376 Q9Y3F1 56 aa16.06■□□□□ 0.16
SYNE1-226ENST00000488376 SORBS3O60504 671 aa16.05■□□□□ 0.16
SYNE1-226ENST00000488376 SEC24BO95487 1268 aa16.05■□□□□ 0.16
SYNE1-226ENST00000488376 CDK7P50613 346 aa16.05■□□□□ 0.16
SYNE1-226ENST00000488376 FAAP100Q0VG06 881 aa16.05■□□□□ 0.16
SYNE1-226ENST00000488376 RUFY3Q7L099 469 aa16.05■□□□□ 0.16
SYNE1-226ENST00000488376 VTI1AQ96AJ9 217 aa16.05■□□□□ 0.16
SYNE1-226ENST00000488376 GLT1D1Q96MS3 346 aa16.05■□□□□ 0.16
SYNE1-226ENST00000488376 MPHOSPH6Q99547 160 aaKnown RBP16.05■□□□□ 0.16
SYNE1-226ENST00000488376 RBM28Q9NW13 759 aaKnown RBP16.05■□□□□ 0.16
SYNE1-226ENST00000488376 V9GY48 417 aaPredicted RBP16.05■□□□□ 0.16
SYNE1-226ENST00000488376 ELP1O95163 1332 aa16.04■□□□□ 0.16
SYNE1-226ENST00000488376 FRMPD4Q14CM0 1322 aa16.04■□□□□ 0.16
SYNE1-226ENST00000488376 ADAMTS3O15072 1205 aa16.04■□□□□ 0.16
SYNE1-226ENST00000488376 EPB41L2O43491 1005 aaKnown RBP16.04■□□□□ 0.16
SYNE1-226ENST00000488376 EIF3JO75822 258 aaKnown RBP16.04■□□□□ 0.16
SYNE1-226ENST00000488376 PSMA5P28066 241 aa16.04■□□□□ 0.16
SYNE1-226ENST00000488376 METAP2P50579 478 aaKnown RBP eCLIP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms