RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 JAMLQ86YT9 394 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 SCUBE1Q8IWY4 988 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 SYNPOQ8N3V7 929 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 USHBP1Q8N6Y0 703 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 APPBP2Q92624 585 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 ASIC4Q96FT7 647 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 CYP26B1Q9NR63 512 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 DUSP13Q9UII6 198 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 MINPP1Q9UNW1 487 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 PTCH2Q9Y6C5 1203 aa5.15□□□□□ -1.59
VPS41-212ENST00000482217 SSU72P8A0A1W2PR75 194 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 TTC36A6NLP5 189 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 MEIS1O00470 390 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 TSPAN6O43657 245 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 ZNF205O95201 554 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 CPP00450 1065 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 SCG5P05408 212 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 VAV1P15498 845 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 LTKP29376 864 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 MAN1A1P33908 653 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 SQSTM1Q13501 440 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 MAPRE1Q15691 268 aaKnown RBP5.14□□□□□ -1.59
VPS41-212ENST00000482217 BRDTQ58F21 947 aaPredicted RBP5.14□□□□□ -1.59
VPS41-212ENST00000482217 SLC23A3Q6PIS1 610 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 CRTC3Q6UUV7 619 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 ATG4DQ86TL0 474 aaPredicted RBP5.14□□□□□ -1.59
VPS41-212ENST00000482217 ATL2Q8NHH9 583 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 PI4K2BQ8TCG2 481 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 BTN2A2Q8WVV5 523 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 IPO9Q96P70 1041 aaKnown RBP5.14□□□□□ -1.59
VPS41-212ENST00000482217 TSPAN18Q96SJ8 248 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 CDC6Q99741 560 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 ZHX3Q9H4I2 956 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 ATP13A1Q9HD20 1204 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 HOMER2Q9NSB8 354 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 FANCLQ9NW38 375 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 LMCD1Q9NZU5 365 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 TCFL5Q9UL49 500 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 INTUQ9ULD6 942 aa5.14□□□□□ -1.59
VPS41-212ENST00000482217 ESYT3A0FGR9 886 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 AURKAO14965 403 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 KIF3BO15066 747 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 TBX1O43435 398 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 TIMM44O43615 452 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 VAMP4O75379 141 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 CDC45O75419 566 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 ZRANB2O95218 330 aaKnown RBP eCLIP5.13□□□□□ -1.59
VPS41-212ENST00000482217 ESR1P03372 595 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 SYPP08247 313 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 COL6A1P12109 1028 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 SCP2P22307 547 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 MASP1P48740 699 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 TERF1P54274 439 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 KCTD2Q14681 263 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 VPS72Q15906 364 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 NFE2Q16621 373 aaPredicted RBP5.13□□□□□ -1.59
VPS41-212ENST00000482217 C1QTNF12Q5T7M4 302 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 NSMFQ6X4W1 530 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 CREG2Q8IUH2 290 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 SAMD3Q8N6K7 520 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 KCTD13Q8WZ19 329 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 FCRL3Q96P31 734 aaPredicted RBP5.13□□□□□ -1.59
VPS41-212ENST00000482217 DHRS4Q9BTZ2 278 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 LGR4Q9BXB1 951 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 SLC12A9Q9BXP2 914 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 LRRC27Q9C0I9 530 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 PPCSQ9HAB8 311 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 PUF60Q9UHX1 559 aaKnown RBP5.13□□□□□ -1.59
VPS41-212ENST00000482217 LZTS1Q9Y250 596 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 RNF114Q9Y508 228 aa5.13□□□□□ -1.59
VPS41-212ENST00000482217 DNAJC25-GNG10A0A024R161 153 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 DYTNA2CJ06 578 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 WASH4PA8MWX3 477 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 TBX3O15119 743 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 PRODHO43272 600 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 PLIN1O60240 522 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 CD3EP07766 207 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 SNRPB2P08579 225 aaKnown RBP5.12□□□□□ -1.59
VPS41-212ENST00000482217 PABPC1P11940 636 aaKnown RBP5.12□□□□□ -1.59
VPS41-212ENST00000482217 POU3F3P20264 500 aaPredicted RBP5.12□□□□□ -1.59
VPS41-212ENST00000482217 GRIA2P42262 883 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 GFRA1P56159 465 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 SUMO1P63165 101 aaKnown RBP5.12□□□□□ -1.59
VPS41-212ENST00000482217 MAP4K2Q12851 820 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 IKZF1Q13422 519 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 ZRSR2Q15696 482 aaKnown RBP5.12□□□□□ -1.59
VPS41-212ENST00000482217 LONRF1Q17RB8 773 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 DPY19L1Q2PZI1 675 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 RCSD1Q6JBY9 416 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 C16orf86Q6ZW13 317 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 C14orf80Q86SX3 495 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 PPM1EQ8WY54 764 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 COPS5Q92905 334 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 KISS1RQ969F8 398 aaPredicted RBP5.12□□□□□ -1.59
VPS41-212ENST00000482217 OSBP2Q969R2 916 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 CDC5LQ99459 802 aaKnown RBP5.12□□□□□ -1.59
VPS41-212ENST00000482217 MCMBPQ9BTE3 642 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 FOXP3Q9BZS1 431 aa5.12□□□□□ -1.59
VPS41-212ENST00000482217 RC3H2Q9HBD1 1191 aaKnown RBP5.12□□□□□ -1.59
VPS41-212ENST00000482217 AS3MTQ9HBK9 375 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms