RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SPEF2Q9C093 1822 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 MYMKA6NI61 221 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 ZBTB5O15062 677 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 BMP3P12645 472 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 CDC25BP30305 580 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 CRY2Q49AN0 593 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 ASPRV1Q53RT3 343 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 DLK2Q6UY11 383 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 CTAGE1Q96RT6 745 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 ANO3Q9BYT9 981 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 CXCR5P32302 372 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 TCP11X2Q5H9J9 407 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 ZNF772Q68DY9 489 aaPredicted RBP15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 CC2D2BQ6DHV5 1058 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 SLC35F6Q8N357 371 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 IKZF4Q9H2S9 585 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 ST7Q9NRC1 585 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 TTC26A0AVF1 554 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 PRPF6O94906 941 aaKnown RBP15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 LZTS2Q9BRK4 669 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 GLI3P10071 1580 aa15.31■□□□□ 0.04
CCDC88A-211ENST00000471947 IBSPP21815 317 aaPredicted RBP15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 TRAPPC10P48553 1259 aa15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 CCDC42Q96M95 316 aa15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 TSG101Q99816 390 aa15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 BHMT2Q9H2M3 363 aa15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 PANK4Q9NVE7 773 aa15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 HDAC6Q9UBN7 1215 aa15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 MKRN1Q9UHC7 482 aaKnown RBP15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 BUB1O43683 1085 aa15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 GCNT3O95395 438 aa15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 TTLL12Q14166 644 aaPredicted RBP15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 SLC15A2Q16348 729 aa15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 ZNF341Q9BYN7 854 aa15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 TRIM9Q9C026 710 aa15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 RBAK-RBAKDNI3L0D1 243 aa15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 PPP1R11O60927 126 aaPredicted RBP15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 TBCAO75347 108 aaKnown RBP15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 ERCC5P28715 1186 aaPredicted RBP15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 SPA17Q15506 151 aa15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 SYCP3Q8IZU3 236 aa15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 FAM198AQ9UFP1 575 aa15.3■□□□□ 0.04
CCDC88A-211ENST00000471947 JAG1P78504 1218 aa15.29■□□□□ 0.04
CCDC88A-211ENST00000471947 NAALADL2Q58DX5 795 aa15.29■□□□□ 0.04
CCDC88A-211ENST00000471947 PDXDC2PQ6P474 469 aa15.29■□□□□ 0.04
CCDC88A-211ENST00000471947 AMNQ9BXJ7 453 aa15.29■□□□□ 0.04
CCDC88A-211ENST00000471947 ZMYND12Q9H0C1 365 aa15.29■□□□□ 0.04
CCDC88A-211ENST00000471947 LAMB4A4D0S4 1761 aa15.29■□□□□ 0.04
CCDC88A-211ENST00000471947 A0A0U1RQG5 324 aaPredicted RBP15.29■□□□□ 0.04
CCDC88A-211ENST00000471947 PPP2R3AQ06190 1150 aa15.29■□□□□ 0.04
CCDC88A-211ENST00000471947 TRIML1Q8N9V2 468 aa15.29■□□□□ 0.04
CCDC88A-211ENST00000471947 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.29■□□□□ 0.043e-9■■■□□ 18.4
CCDC88A-211ENST00000471947 TMC4Q7Z404 712 aa15.29■□□□□ 0.04
CCDC88A-211ENST00000471947 TNFRSF25Q93038 417 aa15.29■□□□□ 0.04
CCDC88A-211ENST00000471947 P2RX5Q93086 422 aa15.29■□□□□ 0.04
CCDC88A-211ENST00000471947 ELMO3Q96BJ8 720 aa15.29■□□□□ 0.04
CCDC88A-211ENST00000471947 FLOT1O75955 427 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 PLEKP08567 350 aaPredicted RBP15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 EIF2AK2P19525 551 aaKnown RBP15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 CYP2J2P51589 502 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 TERF1P54274 439 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 CNGA4Q8IV77 575 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 LRRC15Q8TF66 581 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 PURBQ96QR8 312 aaKnown RBP15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 DNAJC18Q9H819 358 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 TESPA1A2RU30 521 aaPredicted RBP15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 CCP110O43303 1012 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 NOP2P46087 812 aaKnown RBP15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 PSMC6P62333 389 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 SPAG1Q07617 926 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 FAM26FQ5R3K3 315 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 SYDE2Q5VT97 1194 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 POTEAQ6S8J7 498 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 MYCT1Q8N699 235 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 SPZ1Q9BXG8 430 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 GYPCP04921 128 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 ARHGAP4P98171 946 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 R3HDM1Q15032 1099 aaKnown RBP15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 GPATCH4Q5T3I0 446 aaKnown RBP15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 CNNM4Q6P4Q7 775 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 FBXO38Q6PIJ6 1188 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 TMCO3Q6UWJ1 677 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 EEPD1Q7L9B9 569 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 ZNF397Q8NF99 534 aaPredicted RBP15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 ARHGEF10LQ9HCE6 1279 aa15.28■□□□□ 0.04
CCDC88A-211ENST00000471947 TUBGCP6Q96RT7 1819 aa15.27■□□□□ 0.04
CCDC88A-211ENST00000471947 PEX10O60683 326 aa15.27■□□□□ 0.04
CCDC88A-211ENST00000471947 TMED8Q6PL24 325 aaPredicted RBP15.27■□□□□ 0.04
CCDC88A-211ENST00000471947 SPAG5Q96R06 1193 aa15.27■□□□□ 0.04
CCDC88A-211ENST00000471947 RAVER2Q9HCJ3 691 aaKnown RBP15.27■□□□□ 0.04
CCDC88A-211ENST00000471947 ADD3Q9UEY8 706 aaKnown RBP15.27■□□□□ 0.04
CCDC88A-211ENST00000471947 A0A1W2PRG0 241 aa15.27■□□□□ 0.03
CCDC88A-211ENST00000471947 SH3BP5LQ7L8J4 393 aa15.27■□□□□ 0.03
CCDC88A-211ENST00000471947 MTA3Q9BTC8 594 aa15.27■□□□□ 0.03
CCDC88A-211ENST00000471947 DUSP10Q9Y6W6 482 aa15.27■□□□□ 0.03
CCDC88A-211ENST00000471947 ADAMTS7Q9UKP4 1686 aa15.27■□□□□ 0.03
CCDC88A-211ENST00000471947 RSPH10B2B2RC85 870 aa15.27■□□□□ 0.03
CCDC88A-211ENST00000471947 RSPH10BP0C881 870 aa15.27■□□□□ 0.03
CCDC88A-211ENST00000471947 HOXA10P31260 410 aaPredicted RBP15.27■□□□□ 0.03
CCDC88A-211ENST00000471947 NR1I3Q14994 352 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms