RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 hCG_1984214I3L0E3 225 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 CABP4P57796 275 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 PLS1Q14651 629 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 PABPC1LQ4VXU2 614 aaKnown RBP5.94□□□□□ -1.46
SYNE1-220ENST00000471834 EARS2Q5JPH6 523 aaKnown RBP5.94□□□□□ -1.46
SYNE1-220ENST00000471834 ZNF772Q68DY9 489 aaPredicted RBP5.94□□□□□ -1.46
SYNE1-220ENST00000471834 RHBDF2Q6PJF5 856 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 ZNF713Q8N859 430 aaPredicted RBP5.94□□□□□ -1.46
SYNE1-220ENST00000471834 NUP133Q8WUM0 1156 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 PHACTR1Q9C0D0 580 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 TMBIM4Q9HC24 238 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 DLEC1Q9Y238 1755 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 DNM1LO00429 736 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 ATP1A1P05023 1023 aaKnown RBP5.94□□□□□ -1.46
SYNE1-220ENST00000471834 FESP07332 822 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 EDRF1Q3B7T1 1238 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 ACTL7BQ9Y614 415 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 NFASCO94856 1347 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 MYO3BQ8WXR4 1341 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 MTA2O94776 668 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 ANXA1P04083 346 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 CAPNS1P04632 268 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 IFFO1Q0D2I5 559 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 CCDC15Q0P6D6 951 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 STIM1Q13586 685 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 ZC3H12AQ5D1E8 599 aaKnown RBP5.94□□□□□ -1.46
SYNE1-220ENST00000471834 DDX54Q8TDD1 881 aaKnown RBP5.94□□□□□ -1.46
SYNE1-220ENST00000471834 DESI2Q9BSY9 194 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 SLITRK6Q9H5Y7 841 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 SALL4Q9UJQ4 1053 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 LEMD3Q9Y2U8 911 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 GOLGA8BA8MQT2 603 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 ZBTB43O43298 467 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 GGCXP38435 758 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 MDH1P40925 334 aaKnown RBP5.94□□□□□ -1.46
SYNE1-220ENST00000471834 FKBP4Q02790 459 aaKnown RBP eCLIP5.94□□□□□ -1.46
SYNE1-220ENST00000471834 ZHX3Q9H4I2 956 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 GJB4Q9NTQ9 266 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 RMND1Q9NWS8 449 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 CEP131Q9UPN4 1083 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 GPR75-ASB3A0A0A6YYF3 556 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 KRT86O43790 486 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 SERPINC1P01008 464 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 CALM1P0DP23 149 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 CALM2P0DP24 149 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 CALM3P0DP25 149 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 CALRP27797 417 aaKnown RBP5.94□□□□□ -1.46
SYNE1-220ENST00000471834 ERVK-9P63128 1117 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 PARP6Q2NL67 630 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 LEKR1Q6ZMV7 388 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 PROM2Q8N271 834 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 BLOC1S4Q9NUP1 217 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 ASB3Q9Y575 518 aa5.94□□□□□ -1.46
SYNE1-220ENST00000471834 OPA1O60313 960 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 GJB6O95452 261 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 XBP1P17861 261 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 LMAN1P49257 510 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 ADKP55263 362 aaKnown RBP5.93□□□□□ -1.46
SYNE1-220ENST00000471834 CCDC40Q4G0X9 1142 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 MTMR8Q96EF0 704 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 KRT23Q9C075 422 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 KDM4CQ9H3R0 1056 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 PCDHA2Q9Y5H9 948 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 A0A087WZG4 1122 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 SIGLEC16A6NMB1 481 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 ZBTB24O43167 697 aaPredicted RBP5.93□□□□□ -1.46
SYNE1-220ENST00000471834 LPXNO60711 386 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 DRD4P21917 467 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 CUL1Q13616 776 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 SLC4A8Q2Y0W8 1093 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 CCDC13Q8IYE1 715 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 MTMR9Q96QG7 549 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 JPH2Q9BR39 696 aaPredicted RBP5.93□□□□□ -1.46
SYNE1-220ENST00000471834 SEPT11Q9NVA2 429 aaKnown RBP5.93□□□□□ -1.46
SYNE1-220ENST00000471834 HYOU1Q9Y4L1 999 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 EIF4E1BA6NMX2 242 aaKnown RBP5.93□□□□□ -1.46
SYNE1-220ENST00000471834 HES6Q96HZ4 224 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 TANGO6Q9C0B7 1094 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 PIH1D3Q9NQM4 214 aaKnown RBP5.93□□□□□ -1.46
SYNE1-220ENST00000471834 ZSWIM5Q9P217 1185 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 DDX60LQ5H9U9 1706 aaKnown RBP5.93□□□□□ -1.46
SYNE1-220ENST00000471834 ASAP2O43150 1006 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 NOL4O94818 638 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 KRT18P05783 430 aaKnown RBP5.93□□□□□ -1.46
SYNE1-220ENST00000471834 SNHG28P0DPA3 235 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 ZNF131P52739 623 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 IL17AQ16552 155 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 CYP1B1Q16678 543 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 CCDC50Q8IVM0 306 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 ACRBPQ8NEB7 543 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 SLC30A5Q8TAD4 765 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 CCDC85AQ96PX6 553 aaPredicted RBP5.93□□□□□ -1.46
SYNE1-220ENST00000471834 CHP1Q99653 195 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 CAPS2Q9BXY5 557 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 ZNHIT6Q9NWK9 470 aaKnown RBP5.93□□□□□ -1.46
SYNE1-220ENST00000471834 CORO1CQ9ULV4 474 aaPredicted RBP5.93□□□□□ -1.46
SYNE1-220ENST00000471834 TOGARAM1Q9Y4F4 1720 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 ECM29Q5VYK3 1845 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 ERICH4A6NGS2 130 aa5.93□□□□□ -1.46
SYNE1-220ENST00000471834 EYA4O95677 639 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms