RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 STK11IPQ8N1F8 1099 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 EDEM1Q92611 657 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 HSH2DQ96JZ2 352 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 OSBPL5Q9H0X9 879 aaPredicted RBP5.6□□□□□ -1.51
SF3B1-208ENST00000470268 NAPBQ9H115 298 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 TAF1DQ9H5J8 278 aaPredicted RBP5.6□□□□□ -1.51
SF3B1-208ENST00000470268 VEZTQ9HBM0 779 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 ADARB2Q9NS39 739 aaKnown RBP5.6□□□□□ -1.51
SF3B1-208ENST00000470268 NDFIP2Q9NV92 336 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 MCM9Q9NXL9 1143 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 PGAP2Q9UHJ9 254 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 HACL1Q9UJ83 578 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 POLIQ9UNA4 740 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 SNX14Q9Y5W7 946 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 MINDY4BA8MYZ0 360 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 OPLAHO14841 1288 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 CPA1P15085 419 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 INPP5BP32019 993 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 EPHX2P34913 555 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 IDH3AP50213 366 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 MMP14P50281 582 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 DNM1Q05193 864 aaKnown RBP5.6□□□□□ -1.51
SF3B1-208ENST00000470268 PPARAQ07869 468 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 EHHADHQ08426 723 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 DSC3Q14574 896 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 SBK1Q52WX2 424 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 SAMD5Q5TGI4 173 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 C12orf60Q5U649 245 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 ANGEL2Q5VTE6 544 aaKnown RBP5.6□□□□□ -1.51
SF3B1-208ENST00000470268 CERS3Q8IU89 383 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 SLC44A5Q8NCS7 719 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 ZNF526Q8TF50 670 aaPredicted RBP5.6□□□□□ -1.51
SF3B1-208ENST00000470268 PIK3R5Q8WYR1 880 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 IL17RAQ96F46 866 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 DYNLL2Q96FJ2 89 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 KRTAP4-8Q9BYQ9 185 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 NACAP1Q9BZK3 213 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 TMEM39BQ9GZU3 492 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 DNAJC18Q9H819 358 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 NMRK2Q9NPI5 230 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 GGA3Q9NZ52 723 aa5.6□□□□□ -1.51
SF3B1-208ENST00000470268 NEDD4P46934 1319 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 C1QTNF9BB2RNN3 333 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 E7EWF7 191 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 ZNF213O14771 459 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 ENTPD3O75355 529 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 PRDM1O75626 825 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 EPXP11678 715 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 HOXB4P17483 251 aaPredicted RBP5.59□□□□□ -1.51
SF3B1-208ENST00000470268 ARSDP51689 593 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 GABPAQ06546 454 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 FMR1Q06787 632 aaKnown RBP eCLIP5.59□□□□□ -1.513e-7■□□□□ 10.1
SF3B1-208ENST00000470268 RASA3Q14644 834 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 IMMTQ16891 758 aaKnown RBP5.59□□□□□ -1.51
SF3B1-208ENST00000470268 PRAMEF18Q5VWM3 479 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 LRRC69Q6ZNQ3 347 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 TEPSINQ96N21 525 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 RUBCNLQ9H714 662 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 C11orf16Q9NQ32 467 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 ARPP21Q9UBL0 812 aaPredicted RBP5.59□□□□□ -1.51
SF3B1-208ENST00000470268 CTNNA3Q9UI47 895 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 ANAPC4Q9UJX5 808 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 DDX60LQ5H9U9 1706 aaKnown RBP5.59□□□□□ -1.51
SF3B1-208ENST00000470268 ATRNL1Q5VV63 1379 aa5.59□□□□□ -1.51
SF3B1-208ENST00000470268 C2CD2LO14523 706 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 MYO1BO43795 1136 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 POLR3DP05423 398 aaPredicted RBP5.58□□□□□ -1.52
SF3B1-208ENST00000470268 FGRP09769 529 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 ZNF16P17020 682 aaPredicted RBP5.58□□□□□ -1.52
SF3B1-208ENST00000470268 FKBP1CQ5VVH2 108 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 USP50Q70EL3 339 aaPredicted RBP5.58□□□□□ -1.52
SF3B1-208ENST00000470268 FAM83AQ86UY5 434 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 GPR152Q8TDT2 470 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 FAM151AQ8WW52 585 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 UPF3BQ9BZI7 483 aaKnown RBP5.58□□□□□ -1.52
SF3B1-208ENST00000470268 DEFB129Q9H1M3 183 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 SUV39H2Q9H5I1 410 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 UPF2Q9HAU5 1272 aaKnown RBP5.58□□□□□ -1.52
SF3B1-208ENST00000470268 AVENQ9NQS1 362 aaPredicted RBP5.58□□□□□ -1.52
SF3B1-208ENST00000470268 WDR90Q96KV7 1748 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 ROBO3Q96MS0 1386 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 IQCA1LA6NCM1 817 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 B4E1Z4 1266 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 ADM5C9JUS6 153 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 GPR182O15218 404 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 VEGFAP15692 232 aaPredicted RBP5.58□□□□□ -1.52
SF3B1-208ENST00000470268 ANAPC15P60006 121 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 PLCB3Q01970 1234 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 TYRO3Q06418 890 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 RRP1BQ14684 758 aaKnown RBP5.58□□□□□ -1.52
SF3B1-208ENST00000470268 SHROOM1Q2M3G4 852 aaPredicted RBP5.58□□□□□ -1.52
SF3B1-208ENST00000470268 EAPPQ56P03 285 aaPredicted RBP5.58□□□□□ -1.52
SF3B1-208ENST00000470268 AKNAD1Q5T1N1 836 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 NBPF12Q5TAG4 269 aaPredicted RBP5.58□□□□□ -1.52
SF3B1-208ENST00000470268 CHST3Q7LGC8 479 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 METTL16Q86W50 562 aaKnown RBP5.58□□□□□ -1.52
SF3B1-208ENST00000470268 GIPC2Q8TF65 315 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 STAG1Q8WVM7 1258 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 ABHD17AQ96GS6 310 aa5.58□□□□□ -1.52
SF3B1-208ENST00000470268 TCEANC2Q96MN5 208 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms