RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ITGA6P23229 1130 aa6.61□□□□□ -1.35
HMGB1-207ENST00000468384 CACNB3P54284 484 aa6.61□□□□□ -1.35
HMGB1-207ENST00000468384 SPEM2Q0P670 501 aa6.61□□□□□ -1.35
HMGB1-207ENST00000468384 HYAL1Q12794 435 aa6.61□□□□□ -1.35
HMGB1-207ENST00000468384 DIXDC1Q155Q3 683 aa6.61□□□□□ -1.35
HMGB1-207ENST00000468384 MSLNLQ96KJ4 702 aa6.61□□□□□ -1.35
HMGB1-207ENST00000468384 TSEN34Q9BSV6 310 aaKnown RBP6.61□□□□□ -1.35
HMGB1-207ENST00000468384 GDPD2Q9HCC8 539 aa6.61□□□□□ -1.35
HMGB1-207ENST00000468384 SEC31BQ9NQW1 1179 aa6.61□□□□□ -1.35
HMGB1-207ENST00000468384 PICK1Q9NRD5 415 aa6.61□□□□□ -1.35
HMGB1-207ENST00000468384 RRP7AQ9Y3A4 280 aaKnown RBP6.61□□□□□ -1.35
HMGB1-207ENST00000468384 MTORP42345 2549 aa6.6□□□□□ -1.35
HMGB1-207ENST00000468384 MAST3O60307 1309 aa6.6□□□□□ -1.35
HMGB1-207ENST00000468384 TM4SF5O14894 197 aa6.6□□□□□ -1.35
HMGB1-207ENST00000468384 KCNK5O95279 499 aa6.6□□□□□ -1.35
HMGB1-207ENST00000468384 RARBP10826 455 aa6.6□□□□□ -1.35
HMGB1-207ENST00000468384 ACTN1P12814 892 aa6.6□□□□□ -1.35
HMGB1-207ENST00000468384 PABPC4Q13310 644 aaKnown RBP eCLIP6.6□□□□□ -1.35
HMGB1-207ENST00000468384 TMEM259Q4ZIN3 620 aa6.6□□□□□ -1.35
HMGB1-207ENST00000468384 SMRP1Q8NCR6 262 aa6.6□□□□□ -1.35
HMGB1-207ENST00000468384 NPLOC4Q8TAT6 608 aa6.6□□□□□ -1.35
HMGB1-207ENST00000468384 HNRNPLLQ8WVV9 542 aaKnown RBP6.6□□□□□ -1.35
HMGB1-207ENST00000468384 BORCS6Q96GS4 357 aa6.6□□□□□ -1.35
HMGB1-207ENST00000468384 SCLYQ96I15 445 aa6.6□□□□□ -1.35
HMGB1-207ENST00000468384 NOC4LQ9BVI4 516 aaKnown RBP6.6□□□□□ -1.35
HMGB1-207ENST00000468384 SCNM1Q9BWG6 230 aa6.6□□□□□ -1.35
HMGB1-207ENST00000468384 CWC22Q9HCG8 908 aaKnown RBP6.6□□□□□ -1.35
HMGB1-207ENST00000468384 SALL2Q9Y467 1007 aaPredicted RBP6.6□□□□□ -1.35
HMGB1-207ENST00000468384 USP15Q9Y4E8 981 aaPredicted RBP6.6□□□□□ -1.35
HMGB1-207ENST00000468384 ACACAQ13085 2346 aa6.6□□□□□ -1.35
HMGB1-207ENST00000468384 TICRRQ7Z2Z1 1910 aa6.6□□□□□ -1.35
HMGB1-207ENST00000468384 KIF20BQ96Q89 1820 aa6.6□□□□□ -1.35
HMGB1-207ENST00000468384 LOC285556D6RIA3 1793 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 ELP1O95163 1332 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 FIGNL2A6NMB9 653 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 ARVCFO00192 962 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 LINC01565O15544 149 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 WISP1O95388 367 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 GP1BBP13224 206 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 MYL6BP14649 208 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 CHRNA4P43681 627 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 Q3C1V9 767 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 PRAMEF19Q5SWL8 479 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 DEFB128Q7Z7B8 93 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 FAM83AQ86UY5 434 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 GTF3C2Q8WUA4 911 aaPredicted RBP6.59□□□□□ -1.35
HMGB1-207ENST00000468384 C17orf80Q9BSJ5 609 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 GMEB2Q9UKD1 530 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 PAXBP1Q9Y5B6 917 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 NDUFB9Q9Y6M9 179 aa6.59□□□□□ -1.35
HMGB1-207ENST00000468384 USP9YO00507 2555 aaPredicted RBP6.59□□□□□ -1.36
HMGB1-207ENST00000468384 KIF16BQ96L93 1317 aa6.58□□□□□ -1.36
HMGB1-207ENST00000468384 APC2O95996 2303 aa6.58□□□□□ -1.36
HMGB1-207ENST00000468384 MOXD2PA6NHM9 499 aa6.58□□□□□ -1.36
HMGB1-207ENST00000468384 SLC15A5A6NIM6 579 aa6.58□□□□□ -1.36
HMGB1-207ENST00000468384 ATXN7O15265 892 aaPredicted RBP6.58□□□□□ -1.36
HMGB1-207ENST00000468384 GLRX3O76003 335 aaKnown RBP6.58□□□□□ -1.36
HMGB1-207ENST00000468384 CD46P15529 392 aa6.58□□□□□ -1.36
HMGB1-207ENST00000468384 NDUFV1P49821 464 aa6.58□□□□□ -1.36
HMGB1-207ENST00000468384 TROAPQ12815 778 aa6.58□□□□□ -1.36
HMGB1-207ENST00000468384 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.58□□□□□ -1.36
HMGB1-207ENST00000468384 C4orf17Q53FE4 359 aa6.58□□□□□ -1.36
HMGB1-207ENST00000468384 TMCO2Q7Z6W1 182 aaPredicted RBP6.58□□□□□ -1.36
HMGB1-207ENST00000468384 SCYL3Q8IZE3 742 aa6.58□□□□□ -1.36
HMGB1-207ENST00000468384 LINC00528Q8N1L1 170 aa6.58□□□□□ -1.36
HMGB1-207ENST00000468384 ZNF428Q96B54 188 aa6.58□□□□□ -1.36
HMGB1-207ENST00000468384 GLT1D1Q96MS3 346 aa6.58□□□□□ -1.36
HMGB1-207ENST00000468384 EPC1Q9H2F5 836 aa6.58□□□□□ -1.36
HMGB1-207ENST00000468384 RBPJLQ9UBG7 517 aa6.58□□□□□ -1.36
HMGB1-207ENST00000468384 A0A1B0GUL6 1792 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 PTPRFP10586 1907 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 POM121CA8CG34 1229 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 DIAPH1O60610 1272 aaKnown RBP6.57□□□□□ -1.36
HMGB1-207ENST00000468384 ADAMTS4O75173 837 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 DXOO77932 396 aaKnown RBP6.57□□□□□ -1.36
HMGB1-207ENST00000468384 CAPNS1P04632 268 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 ATF7P17544 494 aaPredicted RBP6.57□□□□□ -1.36
HMGB1-207ENST00000468384 KLRK1P26718 216 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 GTF2F1P35269 517 aaKnown RBP eCLIP6.57□□□□□ -1.36
HMGB1-207ENST00000468384 ABL2P42684 1182 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 CCT4P50991 539 aaKnown RBP6.57□□□□□ -1.36
HMGB1-207ENST00000468384 FKBP1AP62942 108 aaKnown RBP6.57□□□□□ -1.36
HMGB1-207ENST00000468384 ERVK-9P63128 1117 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 ERVK-24P63145 666 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 COASYQ13057 564 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 ADAM15Q13444 863 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 TUSC1Q2TAM9 212 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 OLFML2BQ68BL8 750 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 PSAPL1Q6NUJ1 521 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 PRR23CQ6ZRP0 262 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 ITPKCQ96DU7 683 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 AGBL1Q96MI9 1066 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 RAD9AQ99638 391 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 CD209Q9NNX6 404 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 CENPEQ02224 2701 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 SIP14410 1827 aa6.57□□□□□ -1.36
HMGB1-207ENST00000468384 UTP20O75691 2785 aaKnown RBP6.57□□□□□ -1.36
HMGB1-207ENST00000468384 SIPA1L3O60292 1781 aaPredicted RBP6.57□□□□□ -1.36
HMGB1-207ENST00000468384 ROCK2O75116 1388 aaKnown RBP6.57□□□□□ -1.36
HMGB1-207ENST00000468384 MAPK8IP3Q9UPT6 1336 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms