RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 ADAMTSL1Q8N6G6 1762 aa9.37□□□□□ -0.91
USP54-208ENST00000461520 APAF1O14727 1248 aa9.36□□□□□ -0.91
USP54-208ENST00000461520 TCERG1O14776 1098 aaKnown RBP9.36□□□□□ -0.91
USP54-208ENST00000461520 GNAI1P63096 354 aa9.36□□□□□ -0.91
USP54-208ENST00000461520 RASIP1Q5U651 963 aa9.36□□□□□ -0.91
USP54-208ENST00000461520 DDX46Q7L014 1031 aaKnown RBP9.36□□□□□ -0.91
USP54-208ENST00000461520 VSIG10LQ86VR7 867 aa9.36□□□□□ -0.91
USP54-208ENST00000461520 SP8Q8IXZ3 490 aa9.36□□□□□ -0.91
USP54-208ENST00000461520 NIM1KQ8IY84 436 aa9.36□□□□□ -0.91
USP54-208ENST00000461520 SUPT20HQ8NEM7 779 aa9.36□□□□□ -0.91
USP54-208ENST00000461520 ISL2Q96A47 359 aa9.36□□□□□ -0.91
USP54-208ENST00000461520 RTFDC1Q9BY42 306 aaPredicted RBP9.36□□□□□ -0.91
USP54-208ENST00000461520 IFT57Q9NWB7 429 aa9.36□□□□□ -0.91
USP54-208ENST00000461520 ADGRE2Q9UHX3 823 aa9.36□□□□□ -0.91
USP54-208ENST00000461520 ANKRD36CQ5JPF3 1778 aa9.35□□□□□ -0.91
USP54-208ENST00000461520 GIPC1O14908 333 aa9.35□□□□□ -0.91
USP54-208ENST00000461520 PPIP5K2O43314 1243 aa9.35□□□□□ -0.91
USP54-208ENST00000461520 LEFTY1O75610 366 aa9.35□□□□□ -0.91
USP54-208ENST00000461520 LDHBP07195 334 aaKnown RBP9.35□□□□□ -0.91
USP54-208ENST00000461520 CTCFP49711 727 aaPredicted RBP9.35□□□□□ -0.91
USP54-208ENST00000461520 GRAPQ13588 217 aa9.35□□□□□ -0.91
USP54-208ENST00000461520 CYP27C1Q4G0S4 372 aa9.35□□□□□ -0.91
USP54-208ENST00000461520 TMC4Q7Z404 712 aa9.35□□□□□ -0.91
USP54-208ENST00000461520 TP53INP2Q8IXH6 220 aa9.35□□□□□ -0.91
USP54-208ENST00000461520 GRAPLQ8TC17 118 aaPredicted RBP9.35□□□□□ -0.91
USP54-208ENST00000461520 ISCA1Q9BUE6 129 aa9.35□□□□□ -0.91
USP54-208ENST00000461520 SSU72Q9NP77 194 aaKnown RBP9.35□□□□□ -0.91
USP54-208ENST00000461520 PRDM10Q9NQV6 1147 aa9.35□□□□□ -0.91
USP54-208ENST00000461520 CACNA2D2Q9NY47 1150 aa9.35□□□□□ -0.91
USP54-208ENST00000461520 PCOLCE2Q9UKZ9 415 aa9.35□□□□□ -0.91
USP54-208ENST00000461520 PPM1HQ9ULR3 514 aa9.35□□□□□ -0.91
USP54-208ENST00000461520 USP17L7P0C7H9 530 aa9.34□□□□□ -0.91
USP54-208ENST00000461520 LBX1P52954 281 aa9.34□□□□□ -0.91
USP54-208ENST00000461520 ERVK-24P63145 666 aa9.34□□□□□ -0.91
USP54-208ENST00000461520 DPP8Q6V1X1 898 aaPredicted RBP9.34□□□□□ -0.91
USP54-208ENST00000461520 FAM181AQ8N9Y4 354 aa9.34□□□□□ -0.91
USP54-208ENST00000461520 CHMP4AQ9BY43 222 aa9.34□□□□□ -0.91
USP54-208ENST00000461520 C12orf49Q9H741 205 aa9.34□□□□□ -0.91
USP54-208ENST00000461520 COL4A5P29400 1685 aa9.34□□□□□ -0.91
USP54-208ENST00000461520 DCDC2CA8MYV0 355 aa9.33□□□□□ -0.92
USP54-208ENST00000461520 CELA3AP09093 270 aa9.33□□□□□ -0.92
USP54-208ENST00000461520 KIAA2012Q0VF49 1180 aa9.33□□□□□ -0.92
USP54-208ENST00000461520 SF3B3Q15393 1217 aaKnown RBP9.33□□□□□ -0.92
USP54-208ENST00000461520 AOC3Q16853 763 aa9.33□□□□□ -0.92
USP54-208ENST00000461520 PPM1JQ5JR12 505 aa9.33□□□□□ -0.92
USP54-208ENST00000461520 USP50Q70EL3 339 aaPredicted RBP9.33□□□□□ -0.92
USP54-208ENST00000461520 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.33□□□□□ -0.92
USP54-208ENST00000461520 CNTROBQ8N137 903 aa9.33□□□□□ -0.92
USP54-208ENST00000461520 RNF214Q8ND24 703 aa9.33□□□□□ -0.92
USP54-208ENST00000461520 FLCNQ8NFG4 579 aa9.33□□□□□ -0.92
USP54-208ENST00000461520 FAM89AQ96GI7 184 aa9.33□□□□□ -0.92
USP54-208ENST00000461520 FBXL18Q96ME1 805 aa9.33□□□□□ -0.92
USP54-208ENST00000461520 ZNRF3Q9ULT6 936 aa9.33□□□□□ -0.92
USP54-208ENST00000461520 SAMM50Q9Y512 469 aa9.33□□□□□ -0.92
USP54-208ENST00000461520 LTBP1Q14766 1721 aa9.32□□□□□ -0.92
USP54-208ENST00000461520 RASSF10A6NK89 507 aa9.32□□□□□ -0.92
USP54-208ENST00000461520 HSP90B1P14625 803 aaKnown RBP9.32□□□□□ -0.92
USP54-208ENST00000461520 EPS15P42566 896 aa9.32□□□□□ -0.92
USP54-208ENST00000461520 COL19A1Q14993 1142 aa9.32□□□□□ -0.92
USP54-208ENST00000461520 DEFB115Q30KQ5 88 aa9.32□□□□□ -0.92
USP54-208ENST00000461520 LLGL2Q6P1M3 1020 aa9.32□□□□□ -0.92
USP54-208ENST00000461520 C12orf40Q86WS4 652 aa9.32□□□□□ -0.92
USP54-208ENST00000461520 FAM8A1Q9UBU6 413 aa9.32□□□□□ -0.92
USP54-208ENST00000461520 ABT1Q9ULW3 272 aaKnown RBP9.32□□□□□ -0.92
USP54-208ENST00000461520 U3KQE9 123 aa9.32□□□□□ -0.92
USP54-208ENST00000461520 CDHR2Q9BYE9 1310 aa9.31□□□□□ -0.92
USP54-208ENST00000461520 ELL2O00472 640 aaPredicted RBP9.31□□□□□ -0.92
USP54-208ENST00000461520 IRS4O14654 1257 aaPredicted RBP9.31□□□□□ -0.92
USP54-208ENST00000461520 HSPA8P11142 646 aaKnown RBP9.31□□□□□ -0.92
USP54-208ENST00000461520 CXCL9Q07325 125 aa9.31□□□□□ -0.92
USP54-208ENST00000461520 CCDC27Q2M243 656 aa9.31□□□□□ -0.92
USP54-208ENST00000461520 CCDC30Q5VVM6 783 aa9.31□□□□□ -0.92
USP54-208ENST00000461520 CIAPIN1Q6FI81 312 aa9.31□□□□□ -0.92
USP54-208ENST00000461520 PLD6Q8N2A8 252 aaKnown RBP9.31□□□□□ -0.92
USP54-208ENST00000461520 ZBTB38Q8NAP3 1195 aaPredicted RBP9.31□□□□□ -0.92
USP54-208ENST00000461520 C8orf58Q8NAV2 365 aa9.31□□□□□ -0.92
USP54-208ENST00000461520 DUSP23Q9BVJ7 150 aa9.31□□□□□ -0.92
USP54-208ENST00000461520 PHAXQ9H814 394 aaKnown RBP9.31□□□□□ -0.92
USP54-208ENST00000461520 PAK6Q9NQU5 681 aaPredicted RBP9.31□□□□□ -0.92
USP54-208ENST00000461520 ADARB2Q9NS39 739 aaKnown RBP9.31□□□□□ -0.92
USP54-208ENST00000461520 RNF19AQ9NV58 838 aa9.31□□□□□ -0.92
USP54-208ENST00000461520 GPRC5DQ9NZD1 345 aa9.31□□□□□ -0.92
USP54-208ENST00000461520 LAMB2P55268 1798 aa9.31□□□□□ -0.92
USP54-208ENST00000461520 WDR33Q9C0J8 1336 aaKnown RBP9.31□□□□□ -0.92
USP54-208ENST00000461520 TRPM7Q96QT4 1865 aa9.3□□□□□ -0.92
USP54-208ENST00000461520 PATL2C9JE40 543 aaKnown RBP9.3□□□□□ -0.92
USP54-208ENST00000461520 PAX4O43316 350 aa9.3□□□□□ -0.92
USP54-208ENST00000461520 DDX58O95786 925 aaKnown RBP9.3□□□□□ -0.92
USP54-208ENST00000461520 ZEB1P37275 1124 aaPredicted RBP9.3□□□□□ -0.92
USP54-208ENST00000461520 GRM1Q13255 1194 aa9.3□□□□□ -0.92
USP54-208ENST00000461520 TNIP1Q15025 636 aa9.3□□□□□ -0.92
USP54-208ENST00000461520 PCNX4Q63HM2 1172 aa9.3□□□□□ -0.92
USP54-208ENST00000461520 ZNF574Q6ZN55 896 aaPredicted RBP9.3□□□□□ -0.92
USP54-208ENST00000461520 UBE3DQ7Z6J8 389 aa9.3□□□□□ -0.92
USP54-208ENST00000461520 TOP6BLQ8N6T0 577 aa9.3□□□□□ -0.92
USP54-208ENST00000461520 CCDC191Q8NCU4 936 aa9.3□□□□□ -0.92
USP54-208ENST00000461520 BCL7CQ8WUZ0 217 aaPredicted RBP9.3□□□□□ -0.92
USP54-208ENST00000461520 CELF1Q92879 486 aaKnown RBP9.3□□□□□ -0.92
USP54-208ENST00000461520 ZNF428Q96B54 188 aa9.3□□□□□ -0.92
USP54-208ENST00000461520 ABHD8Q96I13 439 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms