RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 MYO1AQ9UBC5 1043 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 DDX25Q9UHL0 483 aaKnown RBP16.85■□□□□ 0.29
LDLR-202ENST00000455727 SERPINA10Q9UK55 444 aa16.85■□□□□ 0.29
LDLR-202ENST00000455727 ARFGEF1Q9Y6D6 1849 aa16.84■□□□□ 0.29
LDLR-202ENST00000455727 MYMKA6NI61 221 aa16.84■□□□□ 0.29
LDLR-202ENST00000455727 H0YIN7 160 aa16.84■□□□□ 0.29
LDLR-202ENST00000455727 SLC26A4O43511 780 aa16.84■□□□□ 0.29
LDLR-202ENST00000455727 FCER1AP12319 257 aa16.84■□□□□ 0.29
LDLR-202ENST00000455727 CBX1P83916 185 aa16.84■□□□□ 0.29
LDLR-202ENST00000455727 UBE2SQ16763 222 aa16.84■□□□□ 0.29
LDLR-202ENST00000455727 CERKLQ49MI3 558 aaPredicted RBP16.84■□□□□ 0.29
LDLR-202ENST00000455727 ARHGAP29Q52LW3 1261 aa16.84■□□□□ 0.29
LDLR-202ENST00000455727 FOXR2Q6PJQ5 311 aa16.84■□□□□ 0.29
LDLR-202ENST00000455727 KIAA0825Q8IV33 1275 aa16.84■□□□□ 0.29
LDLR-202ENST00000455727 ZSCAN29Q8IWY8 852 aaPredicted RBP16.84■□□□□ 0.29
LDLR-202ENST00000455727 SMAP1Q8IYB5 467 aaPredicted RBP16.84■□□□□ 0.29
LDLR-202ENST00000455727 FAM198AQ9UFP1 575 aa16.84■□□□□ 0.29
LDLR-202ENST00000455727 SLX4Q8IY92 1834 aa16.84■□□□□ 0.29
LDLR-202ENST00000455727 EEF2P13639 858 aaKnown RBP16.84■□□□□ 0.29
LDLR-202ENST00000455727 PSMD2Q13200 908 aa16.84■□□□□ 0.29
LDLR-202ENST00000455727 MCM6Q14566 821 aa16.84■□□□□ 0.29
LDLR-202ENST00000455727 SNX29Q8TEQ0 813 aa16.84■□□□□ 0.29
LDLR-202ENST00000455727 HAS1Q92839 578 aa16.84■□□□□ 0.29
LDLR-202ENST00000455727 DDTLA6NHG4 134 aaPredicted RBP16.83■□□□□ 0.28
LDLR-202ENST00000455727 SPDYE4A6NLX3 237 aa16.83■□□□□ 0.28
LDLR-202ENST00000455727 ECE2O60344 883 aa16.83■□□□□ 0.28
LDLR-202ENST00000455727 USP11P51784 963 aa16.83■□□□□ 0.28
LDLR-202ENST00000455727 SEPT2Q15019 361 aa16.83■□□□□ 0.28
LDLR-202ENST00000455727 HYIQ5T013 277 aa16.83■□□□□ 0.28
LDLR-202ENST00000455727 GUF1Q8N442 669 aaKnown RBP16.83■□□□□ 0.28
LDLR-202ENST00000455727 IQCDQ96DY2 449 aa16.83■□□□□ 0.28
LDLR-202ENST00000455727 CNOT6LQ96LI5 555 aaKnown RBP16.83■□□□□ 0.28
LDLR-202ENST00000455727 IRX2Q9BZI1 471 aaPredicted RBP16.83■□□□□ 0.28
LDLR-202ENST00000455727 POTEMA6NI47 508 aa16.82■□□□□ 0.28
LDLR-202ENST00000455727 SLC1A4P43007 532 aa16.82■□□□□ 0.28
LDLR-202ENST00000455727 PPP2R3AQ06190 1150 aa16.82■□□□□ 0.28
LDLR-202ENST00000455727 TSR1Q2NL82 804 aaKnown RBP16.82■□□□□ 0.28
LDLR-202ENST00000455727 MCTP2Q6DN12 878 aa16.82■□□□□ 0.28
LDLR-202ENST00000455727 TTYH3Q9C0H2 523 aa16.82■□□□□ 0.28
LDLR-202ENST00000455727 SEMA6BQ9H3T3 888 aa16.82■□□□□ 0.28
LDLR-202ENST00000455727 FAM53CQ9NYF3 392 aa16.82■□□□□ 0.28
LDLR-202ENST00000455727 EPN1Q9Y6I3 576 aaPredicted RBP16.82■□□□□ 0.28
LDLR-202ENST00000455727 ABCB11O95342 1321 aa16.82■□□□□ 0.28
LDLR-202ENST00000455727 EHHADHQ08426 723 aa16.82■□□□□ 0.28
LDLR-202ENST00000455727 QRICH1Q2TAL8 776 aa16.82■□□□□ 0.28
LDLR-202ENST00000455727 FIGNQ5HY92 759 aa16.82■□□□□ 0.28
LDLR-202ENST00000455727 SLFN13Q68D06 897 aa16.82■□□□□ 0.28
LDLR-202ENST00000455727 TMEM179Q6ZVK1 233 aa16.82■□□□□ 0.28
LDLR-202ENST00000455727 SH3BP5LQ7L8J4 393 aa16.82■□□□□ 0.28
LDLR-202ENST00000455727 ERGIC2Q96RQ1 377 aa16.82■□□□□ 0.28
LDLR-202ENST00000455727 PCDHA12Q9UN75 941 aa16.82■□□□□ 0.28
LDLR-202ENST00000455727 CYP3A7-CYP3A51PA0A087WV96 503 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 B4DLN1 442 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 NDUFA10O95299 355 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 FGFR1OPO95684 399 aaKnown RBP16.81■□□□□ 0.28
LDLR-202ENST00000455727 CYP3A7P24462 503 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 TBC1D8BQ0IIM8 1120 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 TCP10Q12799 353 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 MEA1Q16626 185 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 MOXD1Q6UVY6 613 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 RSRC2Q7L4I2 434 aaKnown RBP16.81■□□□□ 0.28
LDLR-202ENST00000455727 SIAH1Q8IUQ4 282 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 ACRBPQ8NEB7 543 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 NUDT12Q9BQG2 462 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 SLC39A2Q9NP94 309 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 ARGLU1Q9NWB6 273 aaPredicted RBP16.81■□□□□ 0.28
LDLR-202ENST00000455727 PCDHA1Q9Y5I3 950 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 PES1O00541 588 aaKnown RBP16.81■□□□□ 0.28
LDLR-202ENST00000455727 ARHGAP25P42331 645 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 MTIF2P46199 727 aaKnown RBP16.81■□□□□ 0.28
LDLR-202ENST00000455727 RBM5P52756 815 aaKnown RBP eCLIP16.81■□□□□ 0.28
LDLR-202ENST00000455727 LRRC63Q05C16 580 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 MIIPQ5JXC2 388 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 GMCL1P1Q8NEA9 526 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 MBOAT7Q96N66 472 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 CHP1Q99653 195 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 TRIM34Q9BYJ4 488 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 NT5C3AQ9H0P0 336 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 PCDHAC2Q9Y5I4 1007 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 KDM3AQ9Y4C1 1321 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 ATRNL1Q5VV63 1379 aa16.81■□□□□ 0.28
LDLR-202ENST00000455727 COL2A1P02458 1487 aaPredicted RBP16.8■□□□□ 0.28
LDLR-202ENST00000455727 RGPD3A6NKT7 1758 aaPredicted RBP16.8■□□□□ 0.28
LDLR-202ENST00000455727 RGPD4Q7Z3J3 1758 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 A0A0U1RQJ8 604 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 A0A1W2PQJ5 194 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 ENTPD3O75355 529 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 CACNB3P54284 484 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 ZNF569Q5MCW4 686 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 ZNF662Q6ZS27 426 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 GPR161Q8N6U8 529 aaKnown RBP16.8■□□□□ 0.28
LDLR-202ENST00000455727 ATRIPQ8WXE1 791 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 DDX12PQ92771 950 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 CNKSR1Q969H4 720 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 NOC4LQ9BVI4 516 aaKnown RBP16.8■□□□□ 0.28
LDLR-202ENST00000455727 SLURP2P0DP57 97 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 CLCN6P51797 869 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 TUBB4BP68371 445 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 ZBED6P86452 979 aa16.8■□□□□ 0.28
LDLR-202ENST00000455727 AP3B2Q13367 1082 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms