RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 B4DLN1 442 aa11.23□□□□□ -0.61
USP54-207ENST00000451492 OPLAHO14841 1288 aa11.23□□□□□ -0.61
USP54-207ENST00000451492 CYTH3O43739 400 aa11.23□□□□□ -0.61
USP54-207ENST00000451492 ZEB2O60315 1214 aa11.23□□□□□ -0.61
USP54-207ENST00000451492 ARIH2O95376 493 aa11.23□□□□□ -0.61
USP54-207ENST00000451492 PLEKHA8P1O95397 391 aa11.23□□□□□ -0.61
USP54-207ENST00000451492 TXNP10599 105 aaKnown RBP11.23□□□□□ -0.61
USP54-207ENST00000451492 MYCLP12524 364 aaPredicted RBP11.23□□□□□ -0.61
USP54-207ENST00000451492 MRPL12P52815 198 aaKnown RBP11.23□□□□□ -0.61
USP54-207ENST00000451492 FAAP100Q0VG06 881 aa11.23□□□□□ -0.61
USP54-207ENST00000451492 TROAPQ12815 778 aa11.23□□□□□ -0.61
USP54-207ENST00000451492 NECTIN1Q15223 517 aa11.23□□□□□ -0.61
USP54-207ENST00000451492 DUSP28Q4G0W2 176 aa11.23□□□□□ -0.61
USP54-207ENST00000451492 FCHSD1Q86WN1 690 aa11.23□□□□□ -0.61
USP54-207ENST00000451492 MICU3Q86XE3 530 aa11.23□□□□□ -0.61
USP54-207ENST00000451492 ZFP91Q96JP5 570 aaPredicted RBP11.23□□□□□ -0.61
USP54-207ENST00000451492 RMDN3Q96TC7 470 aa11.23□□□□□ -0.61
USP54-207ENST00000451492 MROH7Q68CQ1 1323 aa11.23□□□□□ -0.61
USP54-207ENST00000451492 hCG_1642624A0A1W2PR95 340 aa11.22□□□□□ -0.61
USP54-207ENST00000451492 ARVCFO00192 962 aa11.22□□□□□ -0.61
USP54-207ENST00000451492 TLR3O15455 904 aaKnown RBP11.22□□□□□ -0.61
USP54-207ENST00000451492 DDAH1O94760 285 aa11.22□□□□□ -0.61
USP54-207ENST00000451492 ELP1O95163 1332 aa11.22□□□□□ -0.61
USP54-207ENST00000451492 EDNRBP24530 442 aa11.22□□□□□ -0.61
USP54-207ENST00000451492 ITGA7Q13683 1181 aa11.22□□□□□ -0.61
USP54-207ENST00000451492 LY6KQ17RY6 165 aa11.22□□□□□ -0.61
USP54-207ENST00000451492 C9orf50Q5SZB4 431 aa11.22□□□□□ -0.61
USP54-207ENST00000451492 RNF20Q5VTR2 975 aa11.22□□□□□ -0.61
USP54-207ENST00000451492 Q7L0L9 218 aa11.22□□□□□ -0.61
USP54-207ENST00000451492 CCDC82Q8N4S0 544 aa11.22□□□□□ -0.61
USP54-207ENST00000451492 NSUN6Q8TEA1 469 aaKnown RBP11.22□□□□□ -0.61
USP54-207ENST00000451492 SCFD2Q8WU76 684 aa11.22□□□□□ -0.61
USP54-207ENST00000451492 MTMR8Q96EF0 704 aa11.22□□□□□ -0.61
USP54-207ENST00000451492 TMEM87BQ96K49 555 aa11.22□□□□□ -0.61
USP54-207ENST00000451492 RIOX1Q9H6W3 641 aa11.22□□□□□ -0.61
USP54-207ENST00000451492 PXMP2Q9NR77 195 aa11.22□□□□□ -0.61
USP54-207ENST00000451492 NAP1L2Q9ULW6 460 aaPredicted RBP11.22□□□□□ -0.61
USP54-207ENST00000451492 SCN10AQ9Y5Y9 1956 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 LOC102724159A0A0B4J2E5 919 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 PNMA6FA0A0J9YX94 578 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 CPA1P15085 419 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 KIF5BP33176 963 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 CPT1AP50416 773 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 HSD17B4P51659 736 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 FPGSQ05932 587 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 TTLL4Q14679 1199 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 PWP2Q15269 919 aaKnown RBP11.21□□□□□ -0.61
USP54-207ENST00000451492 SHHQ15465 462 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 STXBP2Q15833 593 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 ADCK5Q3MIX3 580 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 FAM47CQ5HY64 1035 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 ANKRD33Q7Z3H0 272 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 FAM126BQ8IXS8 530 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 RGS22Q8NE09 1264 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 IL31RAQ8NI17 732 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 RRP36Q96EU6 259 aaKnown RBP11.21□□□□□ -0.61
USP54-207ENST00000451492 SEC63Q9UGP8 760 aaKnown RBP11.21□□□□□ -0.61
USP54-207ENST00000451492 SLC12A7Q9Y666 1083 aa11.21□□□□□ -0.61
USP54-207ENST00000451492 UMODL1Q5DID0 1318 aa11.2□□□□□ -0.62
USP54-207ENST00000451492 RBM47A0AV96 593 aaKnown RBP11.2□□□□□ -0.62
USP54-207ENST00000451492 KIAA0355O15063 1070 aa11.2□□□□□ -0.62
USP54-207ENST00000451492 CDK7P50613 346 aa11.2□□□□□ -0.62
USP54-207ENST00000451492 EPHB4P54760 987 aa11.2□□□□□ -0.62
USP54-207ENST00000451492 LRIT3Q3SXY7 679 aa11.2□□□□□ -0.62
USP54-207ENST00000451492 RASEFQ8IZ41 740 aa11.2□□□□□ -0.62
USP54-207ENST00000451492 SRBD1Q8N5C6 995 aaKnown RBP11.2□□□□□ -0.62
USP54-207ENST00000451492 FAM161BQ96MY7 647 aa11.2□□□□□ -0.62
USP54-207ENST00000451492 TOX2Q96NM4 488 aa11.2□□□□□ -0.62
USP54-207ENST00000451492 NEK1Q96PY6 1258 aa11.2□□□□□ -0.62
USP54-207ENST00000451492 TRPV6Q9H1D0 765 aa11.2□□□□□ -0.62
USP54-207ENST00000451492 POLR3EQ9NVU0 708 aa11.2□□□□□ -0.62
USP54-207ENST00000451492 Q9Y3F1 56 aa11.2□□□□□ -0.62
USP54-207ENST00000451492 MRVI1Q9Y6F6 885 aa11.2□□□□□ -0.62
USP54-207ENST00000451492 TRIP12Q14669 1992 aaPredicted RBP11.19□□□□□ -0.62
USP54-207ENST00000451492 GRIN2DO15399 1336 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 GCOM1H8Y6P7 765 aaPredicted RBP11.19□□□□□ -0.62
USP54-207ENST00000451492 NKRFO15226 690 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP54-207ENST00000451492 B4GALT4O60513 344 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 CABYRO75952 493 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 TIMP1P01033 207 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 NR3C2P08235 984 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 POLR2MP0CAP2 368 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 CYP2C18P33260 490 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 CCL23P55773 120 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 NKX3-2P78367 333 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 FGD1P98174 961 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 PURAQ00577 322 aaKnown RBP11.19□□□□□ -0.62
USP54-207ENST00000451492 PGM5Q15124 567 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 BRDTQ58F21 947 aaPredicted RBP11.19□□□□□ -0.62
USP54-207ENST00000451492 SYNE3Q6ZMZ3 975 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 SMARCC2Q8TAQ2 1214 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 AFG1LQ8WV93 481 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 RNPC3Q96LT9 517 aaKnown RBP11.19□□□□□ -0.62
USP54-207ENST00000451492 IWS1Q96ST2 819 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 PDCD2LQ9BRP1 358 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 SPZ1Q9BXG8 430 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 TBX21Q9UL17 535 aa11.19□□□□□ -0.62
USP54-207ENST00000451492 KLF18A0A0U1RQI7 1052 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 GOLGA8AA7E2F4 631 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 GOLGA8BA8MQT2 603 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms