RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 LMAN1P49257 510 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 PPP4CP60510 307 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 CDK17Q00537 523 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 PDE4DQ08499 809 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 R3HDM1Q15032 1099 aaKnown RBP18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 FIGNQ5HY92 759 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 ANKRD40Q6AI12 368 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 ZSCAN29Q8IWY8 852 aaPredicted RBP18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 SLC44A5Q8NCS7 719 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 RPGRIP1Q96KN7 1286 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 PURBQ96QR8 312 aaKnown RBP18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 TFR2Q9UP52 801 aa18.3■□□□□ 0.52
CLCNKA-203ENST00000439316 DDX60LQ5H9U9 1706 aaKnown RBP18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 A0A1W2PQJ5 194 aa18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 DPEP1P16444 411 aa18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 RASA1P20936 1047 aa18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 KLK7P49862 253 aa18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 GSTO1P78417 241 aa18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 CKAP4Q07065 602 aaKnown RBP18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 TBC1D8BQ0IIM8 1120 aa18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 NONOQ15233 471 aaKnown RBP eCLIP18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 ZSCAN26Q16670 478 aa18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 MIIPQ5JXC2 388 aa18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 ZNF444Q8N0Y2 327 aaPredicted RBP18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 FAM71BQ8TC56 605 aa18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 TBC1D22AQ8WUA7 517 aa18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 UPF1Q92900 1129 aaKnown RBP eCLIP18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 ERGIC2Q96RQ1 377 aa18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 MMS19Q96T76 1030 aa18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 NHEJ1Q9H9Q4 299 aaPredicted RBP18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 ZNHIT6Q9NWK9 470 aaKnown RBP18.29■□□□□ 0.52
CLCNKA-203ENST00000439316 KIF13BQ9NQT8 1826 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 ANO9A1A5B4 782 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 RCCD1A6NED2 376 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 LRRIQ3A6PVS8 624 aaPredicted RBP18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 G3V3G9 751 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 C21orf2O43822 256 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 ASIC1P78348 528 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 STK4Q13043 487 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 DCAF8Q5TAQ9 597 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 GOLGA5Q8TBA6 731 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 ACBD3Q9H3P7 528 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 VIPAS39Q9H9C1 493 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 FAN1Q9Y2M0 1017 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 CDK5RAP2Q96SN8 1893 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 TARSL2A2RTX5 802 aaKnown RBP18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 KLRF2D3W0D1 207 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 BAG3O95817 575 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 KCNA3P22001 575 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 MCM3P25205 808 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 NAPAP54920 295 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 TTLL6Q8N841 843 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 LACRTQ9GZZ8 138 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 MTFR1LQ9H019 292 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 DBNDD1Q9H9R9 158 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 STX8Q9UNK0 236 aa18.28■□□□□ 0.52
CLCNKA-203ENST00000439316 CCNT1O60563 726 aaKnown RBP18.27■□□□□ 0.52
CLCNKA-203ENST00000439316 GOLGA8HP0CJ92 632 aa18.27■□□□□ 0.52
CLCNKA-203ENST00000439316 MTIF2P46199 727 aaKnown RBP18.27■□□□□ 0.52
CLCNKA-203ENST00000439316 ORC2Q13416 577 aaPredicted RBP18.27■□□□□ 0.52
CLCNKA-203ENST00000439316 LETM2Q2VYF4 491 aa18.27■□□□□ 0.52
CLCNKA-203ENST00000439316 NEK8Q86SG6 692 aa18.27■□□□□ 0.52
CLCNKA-203ENST00000439316 IQCDQ96DY2 449 aa18.27■□□□□ 0.52
CLCNKA-203ENST00000439316 MMTAG2Q9BU76 263 aaKnown RBP18.27■□□□□ 0.52
CLCNKA-203ENST00000439316 NOC4LQ9BVI4 516 aaKnown RBP18.27■□□□□ 0.52
CLCNKA-203ENST00000439316 RTFDC1Q9BY42 306 aaPredicted RBP18.27■□□□□ 0.52
CLCNKA-203ENST00000439316 MED4Q9NPJ6 270 aa18.27■□□□□ 0.52
CLCNKA-203ENST00000439316 MTMR7Q9Y216 660 aa18.27■□□□□ 0.52
CLCNKA-203ENST00000439316 SRGAP2O75044 1071 aa18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 IPO7O95373 1038 aaKnown RBP18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 FCER1AP12319 257 aa18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 ACTN2P35609 894 aa18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 AMPD3Q01432 767 aa18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 RAD51AP2Q09MP3 1159 aa18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 TGFBRAP1Q8WUH2 860 aa18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 C6orf50Q9HD87 102 aa18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 LDHCP07864 332 aa18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 POLD1P28340 1107 aa18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 GNA11P29992 359 aa18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 AARSP49588 968 aaKnown RBP eCLIP18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 VAV2P52735 878 aa18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 IRX5P78411 483 aaPredicted RBP18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 CC2D2BQ6DHV5 1058 aa18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 CNNM4Q6P4Q7 775 aa18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 KIAA0895Q8NCT3 520 aa18.26■□□□□ 0.51
CLCNKA-203ENST00000439316 SMCO2A6NFE2 343 aa18.25■□□□□ 0.51
CLCNKA-203ENST00000439316 HNRNPH3P31942 346 aaKnown RBP18.25■□□□□ 0.51
CLCNKA-203ENST00000439316 MAP9Q49MG5 647 aa18.25■□□□□ 0.51
CLCNKA-203ENST00000439316 HSP90B2PQ58FF3 399 aa18.25■□□□□ 0.51
CLCNKA-203ENST00000439316 FKBP15Q5T1M5 1219 aa18.25■□□□□ 0.51
CLCNKA-203ENST00000439316 CCDC102AQ96A19 550 aa18.25■□□□□ 0.51
CLCNKA-203ENST00000439316 MXD3Q9BW11 206 aa18.25■□□□□ 0.51
CLCNKA-203ENST00000439316 TSGA10Q9BZW7 698 aa18.25■□□□□ 0.51
CLCNKA-203ENST00000439316 CPVLQ9H3G5 476 aa18.25■□□□□ 0.51
CLCNKA-203ENST00000439316 ZNF287Q9HBT7 754 aa18.25■□□□□ 0.51
CLCNKA-203ENST00000439316 KCNQ5Q9NR82 932 aa18.25■□□□□ 0.51
CLCNKA-203ENST00000439316 SCN9AQ15858 1988 aa18.25■□□□□ 0.51
CLCNKA-203ENST00000439316 SMARCA1P28370 1054 aa18.24■□□□□ 0.51
CLCNKA-203ENST00000439316 CENPPQ6IPU0 288 aa18.24■□□□□ 0.51
CLCNKA-203ENST00000439316 C16orf86Q6ZW13 317 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms