RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 WDR93Q6P2C0 686 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 ZNF662Q6ZS27 426 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 GPIHBP1Q8IV16 184 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 TXLNBQ8N3L3 684 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 LARP4BQ92615 738 aaKnown RBP13.15□□□□□ -0.3
CD44-209ENST00000433892 CDK5RAP3Q96JB5 506 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 CCDC42Q96M95 316 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 FAM207AQ9NSI2 230 aaPredicted RBP13.15□□□□□ -0.3
CD44-209ENST00000433892 CDK5RAP2Q96SN8 1893 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 ESYT2A0FGR8 921 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 ZNF263O14978 683 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 EPHB6O15197 1021 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 ZNF185O15231 689 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 TUBBP07437 444 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 IDEP14735 1019 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 ATP2B4P23634 1241 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 ADCY7P51828 1080 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 VWA3BQ502W6 1294 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 NUDT12Q9BQG2 462 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 GPCPD1Q9NPB8 672 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 MTMR4Q9NYA4 1195 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 POLLQ9UGP5 575 aa13.15□□□□□ -0.3
CD44-209ENST00000433892 A0A1W2PQJ5 194 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 LRRIQ3A6PVS8 624 aaPredicted RBP13.14□□□□□ -0.31
CD44-209ENST00000433892 NOVP48745 357 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 LMAN1P49257 510 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 FXR2P51116 673 aaKnown RBP eCLIP13.14□□□□□ -0.31
CD44-209ENST00000433892 USP14P54578 494 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 KIF5AQ12840 1032 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 TMEM266Q2M3C6 531 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 COBLL1Q53SF7 1204 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 FIGNQ5HY92 759 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 UNC13DQ70J99 1090 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 C2CD5Q86YS7 1000 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 GLIS3Q8NEA6 775 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 FAM163AQ96GL9 167 aaPredicted RBP13.14□□□□□ -0.31
CD44-209ENST00000433892 NDST4Q9H3R1 872 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 JADE2Q9NQC1 790 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 TNNI2P48788 182 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 ORC2Q13416 577 aaPredicted RBP13.14□□□□□ -0.31
CD44-209ENST00000433892 LRRC41Q15345 812 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 SPA17Q15506 151 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 UBE2SQ16763 222 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 CCDC96Q2M329 555 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 KCNK18Q7Z418 384 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 CAGE1Q8TC20 777 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 SNX29Q8TEQ0 813 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 SMCR8Q8TEV9 937 aaPredicted RBP13.14□□□□□ -0.31
CD44-209ENST00000433892 CCDC102AQ96A19 550 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 EXOC4Q96A65 974 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 MMRN2Q9H8L6 949 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 ARHGAP20Q9P2F6 1191 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 STK17AQ9UEE5 414 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 PLAGL2Q9UPG8 496 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 SIK3Q9Y2K2 1263 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 FAN1Q9Y2M0 1017 aa13.14□□□□□ -0.31
CD44-209ENST00000433892 GAKO14976 1311 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 PVALEFA0A1B0GWK0 134 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 PHACTR2O75167 634 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 ZMYND10O75800 440 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 AKR1B1P15121 316 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 VAV2P52735 878 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 CDK17Q00537 523 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 CRY2Q49AN0 593 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 DPP8Q6V1X1 898 aaPredicted RBP13.13□□□□□ -0.31
CD44-209ENST00000433892 SLF2Q8IX21 1173 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 TBC1D16Q8TBP0 767 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 SECISBP2LQ93073 1101 aaKnown RBP13.13□□□□□ -0.31
CD44-209ENST00000433892 GJA10Q969M2 543 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 DAGLAQ9Y4D2 1042 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.13□□□□□ -0.31
CD44-209ENST00000433892 F8W031 263 aaPredicted RBP13.13□□□□□ -0.31
CD44-209ENST00000433892 C6orf229H3BNL8 230 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 PDE2AO00408 941 aaPredicted RBP13.13□□□□□ -0.31
CD44-209ENST00000433892 GTF2IP78347 998 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 ATP2B2Q01814 1243 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 ASPRV1Q53RT3 343 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 KRT79Q5XKE5 535 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 GUF1Q8N442 669 aaKnown RBP13.13□□□□□ -0.31
CD44-209ENST00000433892 MSL3Q8N5Y2 521 aaKnown RBP13.13□□□□□ -0.31
CD44-209ENST00000433892 RAD54LQ92698 747 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 DDX12PQ92771 950 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 PURBQ96QR8 312 aaKnown RBP13.13□□□□□ -0.31
CD44-209ENST00000433892 IFIH1Q9BYX4 1025 aaKnown RBP13.13□□□□□ -0.31
CD44-209ENST00000433892 RAB34Q9BZG1 259 aa13.13□□□□□ -0.31
CD44-209ENST00000433892 CKAP4Q07065 602 aaKnown RBP13.12□□□□□ -0.31
CD44-209ENST00000433892 ECM1Q16610 540 aa13.12□□□□□ -0.31
CD44-209ENST00000433892 TBC1D22AQ8WUA7 517 aa13.12□□□□□ -0.31
CD44-209ENST00000433892 RBM17Q96I25 401 aaKnown RBP13.12□□□□□ -0.31
CD44-209ENST00000433892 DRC1Q96MC2 740 aa13.12□□□□□ -0.31
CD44-209ENST00000433892 LRRC4BQ9NT99 713 aa13.12□□□□□ -0.31
CD44-209ENST00000433892 PCDHA13Q9Y5I0 950 aa13.12□□□□□ -0.31
CD44-209ENST00000433892 ANO9A1A5B4 782 aa13.11□□□□□ -0.31
CD44-209ENST00000433892 hCG_1984214I3L0E3 225 aa13.11□□□□□ -0.31
CD44-209ENST00000433892 PPP1R11O60927 126 aaPredicted RBP13.11□□□□□ -0.31
CD44-209ENST00000433892 HNRNPH3P31942 346 aaKnown RBP13.11□□□□□ -0.31
CD44-209ENST00000433892 EIF4A3P38919 411 aaKnown RBP13.11□□□□□ -0.31
CD44-209ENST00000433892 TNNT3P45378 269 aaPredicted RBP13.11□□□□□ -0.31
CD44-209ENST00000433892 PDIA5Q14554 519 aa13.11□□□□□ -0.31
CD44-209ENST00000433892 MAN2A1Q16706 1144 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms