RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 NOP9Q86U38 636 aaKnown RBP8.5□□□□□ -1.05
CCDC88A-206ENST00000430086 PHF20Q9BVI0 1012 aa8.5□□□□□ -1.05
CCDC88A-206ENST00000430086 EPB41L4BQ9H329 900 aa8.5□□□□□ -1.05
CCDC88A-206ENST00000430086 FBLN5Q9UBX5 448 aa8.5□□□□□ -1.05
CCDC88A-206ENST00000430086 PTCH2Q9Y6C5 1203 aa8.5□□□□□ -1.05
CCDC88A-206ENST00000430086 ABLIM1O14639 778 aa8.49□□□□□ -1.05
CCDC88A-206ENST00000430086 DBHP09172 617 aa8.49□□□□□ -1.05
CCDC88A-206ENST00000430086 BCL6P41182 706 aa8.49□□□□□ -1.05
CCDC88A-206ENST00000430086 TMEM62Q0P6H9 643 aa8.49□□□□□ -1.05
CCDC88A-206ENST00000430086 NR1I3Q14994 352 aa8.49□□□□□ -1.05
CCDC88A-206ENST00000430086 PAQR3Q6TCH7 311 aa8.49□□□□□ -1.05
CCDC88A-206ENST00000430086 SH3TC2Q8TF17 1288 aa8.49□□□□□ -1.05
CCDC88A-206ENST00000430086 DIRC2Q96SL1 478 aa8.49□□□□□ -1.05
CCDC88A-206ENST00000430086 DCP1AQ9NPI6 582 aaPredicted RBP8.49□□□□□ -1.05
CCDC88A-206ENST00000430086 MARCH2Q9P0N8 246 aa8.49□□□□□ -1.05
CCDC88A-206ENST00000430086 KLHL14Q9P2G3 628 aa8.49□□□□□ -1.05
CCDC88A-206ENST00000430086 PCDHA2Q9Y5H9 948 aa8.49□□□□□ -1.05
CCDC88A-206ENST00000430086 BLACEA4D250 179 aa8.48□□□□□ -1.05
CCDC88A-206ENST00000430086 PEX10O60683 326 aa8.48□□□□□ -1.05
CCDC88A-206ENST00000430086 FUCA1P04066 466 aa8.48□□□□□ -1.05
CCDC88A-206ENST00000430086 C6orf222P0C671 652 aaPredicted RBP8.48□□□□□ -1.05
CCDC88A-206ENST00000430086 SDHBP21912 280 aa8.48□□□□□ -1.05
CCDC88A-206ENST00000430086 LSAMPQ13449 338 aa8.48□□□□□ -1.05
CCDC88A-206ENST00000430086 MAMDC2Q7Z304 686 aaPredicted RBP8.48□□□□□ -1.05
CCDC88A-206ENST00000430086 CABP7Q86V35 215 aa8.48□□□□□ -1.05
CCDC88A-206ENST00000430086 NETO2Q8NC67 525 aa8.48□□□□□ -1.05
CCDC88A-206ENST00000430086 USP33Q8TEY7 942 aa8.48□□□□□ -1.05
CCDC88A-206ENST00000430086 PTPRN2Q92932 1015 aa8.48□□□□□ -1.05
CCDC88A-206ENST00000430086 X6R8D5 127 aa8.48□□□□□ -1.05
CCDC88A-206ENST00000430086 H7BY64 318 aa8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 IGSF3O75054 1194 aa8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 GPR85P60893 370 aa8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 GABREP78334 506 aa8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 MESP2Q0VG99 397 aa8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 SQSTM1Q13501 440 aa8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 RAB3GAP1Q15042 981 aa8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 OLFML2BQ68BL8 750 aa8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 KCNT2Q6UVM3 1135 aa8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 CEP68Q76N32 757 aa8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 ZNF605Q86T29 641 aa8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 NLRP10Q86W26 655 aa8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 RIOX2Q8IUF8 465 aa8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 FBXO15Q8NCQ5 510 aaPredicted RBP8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 TMEM169Q96HH4 297 aa8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 RNPC3Q96LT9 517 aaKnown RBP8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 FBXL7Q9UJT9 491 aa8.47□□□□□ -1.05
CCDC88A-206ENST00000430086 NUDT19A8MXV4 375 aa8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 C22orf46C9J442 243 aa8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 MSCO60682 206 aa8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 MAPKAPK2P49137 400 aa8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 WWC2Q6AWC2 1192 aa8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 OGFOD2Q6N063 350 aa8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 RPTNQ6XPR3 784 aa8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 LBX2Q6XYB7 198 aa8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 TEX2Q8IWB9 1127 aa8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 IFNL3Q8IZI9 196 aa8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 POU5F2Q8N7G0 328 aa8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 CDIP1Q9H305 208 aa8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 KANSL2Q9H9L4 492 aa8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 TMEM260Q9NX78 707 aa8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 BTG4Q9NY30 223 aa8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 ASXL2Q76L83 1435 aa8.46□□□□□ -1.06
CCDC88A-206ENST00000430086 AQP7O14520 342 aa8.45□□□□□ -1.06
CCDC88A-206ENST00000430086 FARP2O94887 1054 aaPredicted RBP8.45□□□□□ -1.06
CCDC88A-206ENST00000430086 MROH9Q5TGP6 573 aa8.45□□□□□ -1.06
CCDC88A-206ENST00000430086 TRMT2BQ96GJ1 504 aaKnown RBP8.45□□□□□ -1.06
CCDC88A-206ENST00000430086 FAM84AQ96KN4 292 aa8.45□□□□□ -1.06
CCDC88A-206ENST00000430086 MYOCOSA0A1B0GUC4 107 aa8.44□□□□□ -1.06
CCDC88A-206ENST00000430086 NTRK1P04629 796 aa8.44□□□□□ -1.06
CCDC88A-206ENST00000430086 FPR2P25090 351 aa8.44□□□□□ -1.06
CCDC88A-206ENST00000430086 VIPR1P32241 457 aa8.44□□□□□ -1.06
CCDC88A-206ENST00000430086 KIZQ2M2Z5 673 aa8.44□□□□□ -1.06
CCDC88A-206ENST00000430086 TRIM61Q5EBN2 209 aa8.44□□□□□ -1.06
CCDC88A-206ENST00000430086 CHAMP1Q96JM3 812 aa8.44□□□□□ -1.06
CCDC88A-206ENST00000430086 MRPL4Q9BYD3 311 aaKnown RBP8.44□□□□□ -1.06
CCDC88A-206ENST00000430086 MCOLN1Q9GZU1 580 aa8.44□□□□□ -1.06
CCDC88A-206ENST00000430086 CLDND1Q9NY35 253 aa8.44□□□□□ -1.06
CCDC88A-206ENST00000430086 NUDT5Q9UKK9 219 aa8.44□□□□□ -1.06
CCDC88A-206ENST00000430086 TEX51A0A1B0GUA7 166 aa8.43□□□□□ -1.06
CCDC88A-206ENST00000430086 F8W031 263 aaPredicted RBP8.43□□□□□ -1.06
CCDC88A-206ENST00000430086 KCNQ2O43526 872 aa8.43□□□□□ -1.06
CCDC88A-206ENST00000430086 SLC6A11P48066 632 aa8.43□□□□□ -1.06
CCDC88A-206ENST00000430086 PLEKHN1Q494U1 663 aaPredicted RBP8.43□□□□□ -1.06
CCDC88A-206ENST00000430086 JAZF1Q86VZ6 243 aa8.43□□□□□ -1.06
CCDC88A-206ENST00000430086 GSTCDQ8NEC7 633 aa8.43□□□□□ -1.06
CCDC88A-206ENST00000430086 PEX11GQ96HA9 241 aa8.43□□□□□ -1.06
CCDC88A-206ENST00000430086 KCNK12Q9HB15 430 aa8.43□□□□□ -1.06
CCDC88A-206ENST00000430086 NCOA5Q9HCD5 579 aaKnown RBP8.43□□□□□ -1.06
CCDC88A-206ENST00000430086 TRAF6Q9Y4K3 522 aa8.43□□□□□ -1.06
CCDC88A-206ENST00000430086 ZC3H12DA2A288 527 aaKnown RBP8.42□□□□□ -1.06
CCDC88A-206ENST00000430086 EFCAB14O75071 495 aa8.42□□□□□ -1.06
CCDC88A-206ENST00000430086 SEMA7AO75326 666 aa8.42□□□□□ -1.06
CCDC88A-206ENST00000430086 NAT1P18440 290 aa8.42□□□□□ -1.06
CCDC88A-206ENST00000430086 TXKP42681 527 aa8.42□□□□□ -1.06
CCDC88A-206ENST00000430086 SRSF3P84103 164 aaKnown RBP8.42□□□□□ -1.06
CCDC88A-206ENST00000430086 ZC3H14Q6PJT7 736 aaKnown RBP8.42□□□□□ -1.06
CCDC88A-206ENST00000430086 DCP2Q8IU60 420 aaKnown RBP8.42□□□□□ -1.06
CCDC88A-206ENST00000430086 BHLHE22Q8NFJ8 381 aaPredicted RBP8.42□□□□□ -1.06
CCDC88A-206ENST00000430086 TSPAN17Q96FV3 270 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms