RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 WHAMMP3Q1A5X7 153 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 GLE1Q53GS7 698 aaKnown RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 SNX19Q92543 992 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 COA7Q96BR5 231 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 TRAIPQ9BWF2 469 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 PPEF1O14829 653 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 HNRNPDLO14979 420 aaKnown RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 CTNNA1P35221 906 aaKnown RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 MYL7Q01449 175 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 POLA2Q14181 598 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 PATL1Q86TB9 770 aaKnown RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 GIPC2Q8TF65 315 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 PPWD1Q96BP3 646 aaKnown RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 TRPC5Q9UL62 973 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 ZNF148Q9UQR1 794 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 SEMA3EO15041 775 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 TAF5LO75529 589 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 RXRBP28702 533 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 TMTC3Q6ZXV5 915 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 DIS3L2Q8IYB7 885 aaKnown RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 BLIDQ8IZY5 108 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 CNPY4Q8N129 248 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 PPM1KQ8N3J5 372 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 ACRBPQ8NEB7 543 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 SLC10A4Q96EP9 437 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 DCTPP1Q9H773 170 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 MRPL47Q9HD33 250 aaKnown RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 POLKQ9UBT6 870 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 FRMPD2Q68DX3 1309 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 MAST1Q9Y2H9 1570 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 ABCB4P21439 1286 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 CHMLP26374 656 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 FANCCQ00597 558 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 PPARAQ07869 468 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 SKIV2LQ15477 1246 aaKnown RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 NEK8Q86SG6 692 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 RNF168Q8IYW5 571 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 POLR3CQ9BUI4 534 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 KIFC3Q9BVG8 833 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 PPP1R9AQ9ULJ8 1098 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 INO80B-WBP1J3KQ70 363 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 NEMP1O14524 444 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 LUC7L3O95232 432 aaKnown RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 CLCN1P35523 988 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 KRBA2Q6ZNG9 492 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 YAF2Q8IY57 180 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 KCTD6Q8NC69 237 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 ZNF577Q9BSK1 485 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 INO80BQ9C086 356 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 OGFRQ9NZT2 677 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 SUFUQ9UMX1 484 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 SAR1BQ9Y6B6 198 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 PRXQ9BXM0 1461 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 BAG2O95816 211 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 TECP42680 631 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 CLNS1AP54105 237 aaKnown RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 CTDSPL2Q05D32 466 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 SLC12A1Q13621 1099 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 Q3C1V9 767 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 C20orf194Q5TEA3 1177 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 ARHGEF18Q6ZSZ5 1173 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 LRRC43Q8N309 656 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 KBTBD3Q8NAB2 608 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 SRPK1Q96SB4 655 aaKnown RBP7.44□□□□□ -1.22
SCN1A-204ENST00000423058 PIK3C2GO75747 1445 aa7.44□□□□□ -1.22
SCN1A-204ENST00000423058 HIP1RO75146 1068 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 DDAH1O94760 285 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 TTLL1O95922 423 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 TIMM10P62072 90 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 FAM196AQ6ZSG2 479 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 FAM186BQ8IYM0 893 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 PI4K2BQ8TCG2 481 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 RASSF4Q9H2L5 321 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 TMEM206Q9H813 350 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 DYRK4Q9NR20 520 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 ZKSCAN5Q9Y2L8 839 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 MED23Q9ULK4 1368 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 KRT87PA6NCN2 255 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 MYO1FO00160 1098 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 KCNK3O14649 394 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 BRD1O95696 1058 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 ATG16L1Q676U5 607 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 JRKLQ9Y4A0 524 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 EDC4Q6P2E9 1401 aaKnown RBP7.43□□□□□ -1.22
SCN1A-204ENST00000423058 FMNL1O95466 1100 aaPredicted RBP7.43□□□□□ -1.22
SCN1A-204ENST00000423058 RAP1GDS1P52306 607 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 C16orf72Q14CZ0 275 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 TTC23LQ6PF05 361 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 C8orf58Q8NAV2 365 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 CCNYQ8ND76 341 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 OTUB1Q96FW1 271 aaPredicted RBP7.43□□□□□ -1.22
SCN1A-204ENST00000423058 NT5C1BQ96P26 610 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 ZBTB18Q99592 522 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 POLIQ9UNA4 740 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 OR52Z1P0C646 297 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 HSPA6P17066 643 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 KIAA1755Q5JYT7 1200 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 MYSM1Q5VVJ2 828 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 CEP19Q96LK0 163 aa7.43□□□□□ -1.22
SCN1A-204ENST00000423058 CENPKQ9BS16 269 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms