RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 MECOMQ03112 1051 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 TTC38Q5R3I4 469 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 HORMAD1Q86X24 394 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 C17orf53Q8N3J3 647 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 SNX29Q8TEQ0 813 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 E2F4Q16254 413 aa14.42□□□□□ -0.1
CCDC88A-204ENST00000413716 DYTNA2CJ06 578 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 ADKP55263 362 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 C16orf72Q14CZ0 275 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 SLC24A3Q9HC58 644 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 RALGAPBQ86X10 1494 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 KDRP35968 1356 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 HABP4Q5JVS0 413 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 PODNQ7Z5L7 613 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 TRIM11Q96F44 468 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 FANCD2Q9BXW9 1451 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 GOLGA8FQ08AF8 430 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 GOLGA8DPQ0D2H9 430 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 C1orf146Q5VVC0 180 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 RFX6Q8HWS3 928 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 SMYD3Q9H7B4 428 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 H0YCG3 227 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 NCAPD3P42695 1498 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 EXOC1LA0A1B0GW35 172 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 ADCY7P51828 1080 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 DMC1Q14565 340 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 CATSPER1Q8NEC5 780 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 KCNA1Q09470 495 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 PI4KAP2A4QPH2 592 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 PAMP19021 973 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 NFKBIAP25963 317 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 IFRD2Q12894 506 aaPredicted RBP14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 PI4KAP1Q8N8J0 262 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 COQ7Q99807 217 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 ANKRD2Q9GZV1 360 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 HACD3Q9P035 362 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 SRGAP2CP0DJJ0 459 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 TXKP42681 527 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 CFAP36Q96G28 342 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 PHACTR3Q96KR7 559 aa14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 PAPOLBQ9NRJ5 636 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-204ENST00000413716 CYP2J2P51589 502 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 MORC3Q14149 939 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 C19orf60Q96EN9 201 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 PLS3P13797 630 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 OR8K1Q8NGG5 319 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 RABGGTAQ92696 567 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 NDEL1Q9GZM8 345 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 SELENONQ9NZV5 590 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 MAP4P27816 1152 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 TEKT4Q8WW24 435 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 JDP2Q8WYK2 163 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 IQANK1A0A1B0GTG1 560 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 MT-ND3P03897 115 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 SOX5P35711 763 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 SEPT3Q9UH03 358 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 IQSEC3Q9UPP2 1182 aaPredicted RBP14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 SNRPA1P09661 255 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 ANKRD13DQ6ZTN6 518 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 ACAD11Q709F0 780 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 NLRP4Q96MN2 994 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 C10orf88Q9H8K7 445 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 ANO5Q75V66 913 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 OTULINQ96BN8 352 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 SH3GL1Q99961 368 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 ARHGEF3Q9NR81 526 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 ARIH2O95376 493 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 ANKLE2Q86XL3 938 aa14.4□□□□□ -0.1
CCDC88A-204ENST00000413716 SYNJ2BP-COX16A0A087WUM0 186 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 AARSP49588 968 aaKnown RBP eCLIP14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 YIPF3Q9GZM5 350 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 COX16Q9P0S2 106 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 RGS9BPQ6ZS82 235 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 DISC1Q9NRI5 854 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 CPSF3Q9UKF6 684 aaKnown RBP14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 PCDHB13Q9Y5F0 798 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 ASCC2Q9H1I8 757 aaPredicted RBP14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 NDE1Q9NXR1 346 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 GRM8O00222 908 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 NUP62P37198 522 aaPredicted RBP14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 FAM69CQ0P6D2 419 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 OSBPL10Q9BXB5 764 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 NLRC4Q9NPP4 1024 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 DNAJC17Q9NVM6 304 aaKnown RBP14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 SLC12A6Q9UHW9 1150 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 TOMM70O94826 608 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 USHBP1Q8N6Y0 703 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 DEPTORQ8TB45 409 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 ALDH1L1O75891 902 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 ANP32DO95626 131 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 SERPINB1P30740 379 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 KRT25Q7Z3Z0 450 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 C6orf203Q9P0P8 240 aaPredicted RBP14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 AP1B1Q10567 949 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 GNPTABQ3T906 1256 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 FAM193BQ96PV7 902 aaPredicted RBP14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 STOML1Q9UBI4 398 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 SLC8A2Q9UPR5 921 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 LIG4P49917 911 aa14.39□□□□□ -0.11
CCDC88A-204ENST00000413716 TBL3Q12788 808 aaKnown RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms