RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 STXBP3O00186 592 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 TRIM66O15016 1216 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 GOLGA6DP0CG33 693 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 IDEP14735 1019 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 TRIM21P19474 475 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 MCM7P33993 719 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 UBA7P41226 1012 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 FXR2P51116 673 aaKnown RBP eCLIP6.38□□□□□ -1.392e-6■■■■□ 20.2
CCDC88A-203ENST00000412148 TBC1D8BQ0IIM8 1120 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 DRP2Q13474 957 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 PLCB4Q15147 1175 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 VWA3BQ502W6 1294 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 RBM26Q5T8P6 1007 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 KDM7AQ6ZMT4 941 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 B4GALNT4Q76KP1 1039 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 MIGA1Q8NAN2 632 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 SPATA4Q8NEY3 305 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 CNOT6LQ96LI5 555 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 GOLGA6AQ9NYA3 693 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 STIM2Q9P246 746 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 TRIM10Q9UDY6 481 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 ZNF652Q9Y2D9 606 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 PCDHA13Q9Y5I0 950 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 FAM205AQ6ZU69 1335 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 LY75O60449 1722 aa6.38□□□□□ -1.39
CCDC88A-203ENST00000412148 CCDC194A0A1B0GVG4 234 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 ZNF263O14978 683 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 OR52Z1P0C646 297 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 MYBP10242 640 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 GUCY2CP25092 1073 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 PPP4CP60510 307 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 PDIA5Q14554 519 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 SPDYCQ5MJ68 293 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 C10orf76Q5T2E6 689 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 MMS22LQ6ZRQ5 1243 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 UNC13DQ70J99 1090 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 TAX1BP1Q86VP1 789 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 IQCKQ8N0W5 287 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 HELBQ8NG08 1087 aaPredicted RBP6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 OSBPL9Q96SU4 736 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 CAPS2Q9BXY5 557 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 LUC7LQ9NQ29 371 aaKnown RBP6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 AGPAT5Q9NUQ2 364 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 MAD2L2Q9UI95 211 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 LTBP1Q14766 1721 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 TRIM49BA6NDI0 452 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 B4DLN1 442 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 USP17L12C9JPN9 530 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 USP17L21D6R901 530 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 EBAG9O00559 213 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 ATP2B1P20020 1258 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 USP8P40818 1118 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 C12orf60Q5U649 245 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 HAUS3Q68CZ6 603 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 SPTY2D1Q68D10 685 aaPredicted RBP6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 ANKRD40Q6AI12 368 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 LRIG3Q6UXM1 1119 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 C15orf52Q6ZUT6 534 aaKnown RBP6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 WHAMMQ8TF30 809 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 BAP1Q92560 729 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 FAM84BQ96KN1 310 aaPredicted RBP6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 CCDC42Q96M95 316 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 IFIH1Q9BYX4 1025 aaKnown RBP6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 GEMIN8Q9NWZ8 242 aaKnown RBP6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 ARHGAP20Q9P2F6 1191 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 HDAC6Q9UBN7 1215 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 TMEM59LQ9UK28 342 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 THRAP3Q9Y2W1 955 aaKnown RBP6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 PCDHGC5Q9Y5F6 944 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 STK24Q9Y6E0 443 aa6.37□□□□□ -1.39
CCDC88A-203ENST00000412148 RBBP6Q7Z6E9 1792 aaKnown RBP6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 FSBPO95073 299 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 GNA14O95837 355 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 MYBL2P10244 700 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 KIF11P52732 1056 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 EVA1CP58658 441 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 DDR1Q08345 913 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 HYIQ5T013 277 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 CABP7Q86V35 215 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 PACS2Q86VP3 889 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 ANKRD18AQ8IVF6 992 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 IFT20Q8IY31 132 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 CNPY4Q8N129 248 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 NOC4LQ9BVI4 516 aaKnown RBP6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 ANKRD2Q9GZV1 360 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 SLX4Q8IY92 1834 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 SHTN1A0MZ66 631 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 EXOC5O00471 708 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 ENC1O14682 589 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 TFRCP02786 760 aaKnown RBP6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 GNA11P29992 359 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 PAFAH1B1P43034 410 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 TNNT3P45378 269 aaPredicted RBP6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 PAK2Q13177 524 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 ZCWPW2Q504Y3 356 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 PPP1R18Q6NYC8 613 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 FOXR1Q6PIV2 292 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 KIAA0895Q8NCT3 520 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 CALR3Q96L12 384 aaKnown RBP6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 CEP63Q96MT8 703 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms