RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 ANKRD33Q7Z3H0 272 aa22.12■■□□□ 1.13
SF3A1-202ENST00000411423 GLT1D1Q96MS3 346 aa22.12■■□□□ 1.13
SF3A1-202ENST00000411423 NEK1Q96PY6 1258 aa22.12■■□□□ 1.13
SF3A1-202ENST00000411423 RMDN3Q96TC7 470 aa22.12■■□□□ 1.13
SF3A1-202ENST00000411423 MAF1Q9H063 256 aa22.12■■□□□ 1.13
SF3A1-202ENST00000411423 AP5M1Q9H0R1 490 aa22.12■■□□□ 1.13
SF3A1-202ENST00000411423 CLTBP09497 229 aa22.11■■□□□ 1.13
SF3A1-202ENST00000411423 CPA1P15085 419 aa22.11■■□□□ 1.13
SF3A1-202ENST00000411423 BADQ92934 168 aa22.11■■□□□ 1.13
SF3A1-202ENST00000411423 KCNB2Q92953 911 aa22.11■■□□□ 1.13
SF3A1-202ENST00000411423 LRCH3Q96II8 777 aa22.11■■□□□ 1.13
SF3A1-202ENST00000411423 SPZ1Q9BXG8 430 aa22.11■■□□□ 1.13
SF3A1-202ENST00000411423 PXMP2Q9NR77 195 aa22.11■■□□□ 1.13
SF3A1-202ENST00000411423 CCDC69A6NI79 296 aa22.1■■□□□ 1.13
SF3A1-202ENST00000411423 RNF20Q5VTR2 975 aa22.1■■□□□ 1.13
SF3A1-202ENST00000411423 CCDC62Q6P9F0 684 aa22.1■■□□□ 1.13
SF3A1-202ENST00000411423 SGMS1Q86VZ5 419 aa22.1■■□□□ 1.13
SF3A1-202ENST00000411423 TDHQ8IZJ6 230 aa22.1■■□□□ 1.13
SF3A1-202ENST00000411423 IL31RAQ8NI17 732 aa22.1■■□□□ 1.13
SF3A1-202ENST00000411423 CTCFLQ8NI51 663 aaPredicted RBP22.1■■□□□ 1.13
SF3A1-202ENST00000411423 NSUN6Q8TEA1 469 aaKnown RBP22.1■■□□□ 1.13
SF3A1-202ENST00000411423 BRPF3Q9ULD4 1205 aa22.1■■□□□ 1.13
SF3A1-202ENST00000411423 LAMA2P24043 3122 aaKnown RBP22.09■■□□□ 1.13
SF3A1-202ENST00000411423 A0A0U1RQG5 324 aaPredicted RBP22.09■■□□□ 1.13
SF3A1-202ENST00000411423 ARVCFO00192 962 aa22.09■■□□□ 1.13
SF3A1-202ENST00000411423 PSMC6P62333 389 aa22.09■■□□□ 1.13
SF3A1-202ENST00000411423 ARHGEF16Q5VV41 709 aa22.09■■□□□ 1.13
SF3A1-202ENST00000411423 FAM126BQ8IXS8 530 aa22.09■■□□□ 1.13
SF3A1-202ENST00000411423 TMTC2Q8N394 836 aa22.09■■□□□ 1.13
SF3A1-202ENST00000411423 SLC43A3Q8NBI5 491 aa22.09■■□□□ 1.13
SF3A1-202ENST00000411423 OR6J1Q8NGC5 347 aa22.09■■□□□ 1.13
SF3A1-202ENST00000411423 VTI1AQ96AJ9 217 aa22.09■■□□□ 1.13
SF3A1-202ENST00000411423 TOX2Q96NM4 488 aa22.09■■□□□ 1.13
SF3A1-202ENST00000411423 PRKAG2Q9UGJ0 569 aa22.09■■□□□ 1.13
SF3A1-202ENST00000411423 hCG_1642624A0A1W2PR95 340 aa22.08■■□□□ 1.13
SF3A1-202ENST00000411423 KIAA0355O15063 1070 aa22.08■■□□□ 1.13
SF3A1-202ENST00000411423 RGS20O76081 388 aa22.08■■□□□ 1.13
SF3A1-202ENST00000411423 NR3C2P08235 984 aa22.08■■□□□ 1.13
SF3A1-202ENST00000411423 TXNP10599 105 aaKnown RBP22.08■■□□□ 1.13
SF3A1-202ENST00000411423 HSPA4P34932 840 aa22.08■■□□□ 1.13
SF3A1-202ENST00000411423 PPP2R5BQ15173 497 aa22.08■■□□□ 1.13
SF3A1-202ENST00000411423 LY6KQ17RY6 165 aa22.08■■□□□ 1.13
SF3A1-202ENST00000411423 SEPT14Q6ZU15 432 aa22.08■■□□□ 1.13
SF3A1-202ENST00000411423 DHX32Q7L7V1 743 aaKnown RBP22.08■■□□□ 1.13
SF3A1-202ENST00000411423 SCFD2Q8WU76 684 aa22.08■■□□□ 1.13
SF3A1-202ENST00000411423 ZFP91Q96JP5 570 aaPredicted RBP22.08■■□□□ 1.13
SF3A1-202ENST00000411423 IWS1Q96ST2 819 aa22.08■■□□□ 1.13
SF3A1-202ENST00000411423 PDCD2LQ9BRP1 358 aa22.08■■□□□ 1.13
SF3A1-202ENST00000411423 PPP4R2Q9NY27 417 aa22.08■■□□□ 1.13
SF3A1-202ENST00000411423 TBX21Q9UL17 535 aa22.08■■□□□ 1.13
SF3A1-202ENST00000411423 SNX14Q9Y5W7 946 aa22.08■■□□□ 1.13
SF3A1-202ENST00000411423 SLC12A7Q9Y666 1083 aa22.08■■□□□ 1.13
SF3A1-202ENST00000411423 KIF5BP33176 963 aa22.07■■□□□ 1.12
SF3A1-202ENST00000411423 EPHB4P54760 987 aa22.07■■□□□ 1.12
SF3A1-202ENST00000411423 APOA5Q6Q788 366 aa22.07■■□□□ 1.12
SF3A1-202ENST00000411423 TMTC3Q6ZXV5 915 aa22.07■■□□□ 1.12
SF3A1-202ENST00000411423 MICU3Q86XE3 530 aa22.07■■□□□ 1.12
SF3A1-202ENST00000411423 FANCBQ8NB91 859 aa22.07■■□□□ 1.12
SF3A1-202ENST00000411423 PPP1R13LQ8WUF5 828 aa22.07■■□□□ 1.12
SF3A1-202ENST00000411423 LBHD1Q9BQE6 289 aaPredicted RBP22.07■■□□□ 1.12
SF3A1-202ENST00000411423 KIAA1217Q5T5P2 1943 aa22.07■■□□□ 1.12
SF3A1-202ENST00000411423 CD4P01730 458 aa22.06■■□□□ 1.12
SF3A1-202ENST00000411423 SMARCA1P28370 1054 aa22.06■■□□□ 1.12
SF3A1-202ENST00000411423 PURAQ00577 322 aaKnown RBP22.06■■□□□ 1.12
SF3A1-202ENST00000411423 ITGA7Q13683 1181 aa22.06■■□□□ 1.12
SF3A1-202ENST00000411423 PGM5Q15124 567 aa22.06■■□□□ 1.12
SF3A1-202ENST00000411423 STXBP2Q15833 593 aa22.06■■□□□ 1.12
SF3A1-202ENST00000411423 C9orf50Q5SZB4 431 aa22.06■■□□□ 1.12
SF3A1-202ENST00000411423 FCHSD1Q86WN1 690 aa22.06■■□□□ 1.12
SF3A1-202ENST00000411423 CCDC82Q8N4S0 544 aa22.06■■□□□ 1.12
SF3A1-202ENST00000411423 MPHOSPH6Q99547 160 aaKnown RBP22.06■■□□□ 1.12
SF3A1-202ENST00000411423 TMEM39AQ9NV64 488 aa22.06■■□□□ 1.12
SF3A1-202ENST00000411423 DCDC2CA8MYV0 355 aa22.05■■□□□ 1.12
SF3A1-202ENST00000411423 B4DLN1 442 aa22.05■■□□□ 1.12
SF3A1-202ENST00000411423 GCOM1H8Y6P7 765 aaPredicted RBP22.05■■□□□ 1.12
SF3A1-202ENST00000411423 POLR2MP0CAP2 368 aa22.05■■□□□ 1.12
SF3A1-202ENST00000411423 CALM1P0DP23 149 aa22.05■■□□□ 1.12
SF3A1-202ENST00000411423 CALM2P0DP24 149 aa22.05■■□□□ 1.12
SF3A1-202ENST00000411423 CALM3P0DP25 149 aa22.05■■□□□ 1.12
SF3A1-202ENST00000411423 MRPL12P52815 198 aaKnown RBP22.05■■□□□ 1.12
SF3A1-202ENST00000411423 ARHGAP1Q07960 439 aa22.05■■□□□ 1.12
SF3A1-202ENST00000411423 GPKOWQ92917 476 aaPredicted RBP eCLIP22.05■■□□□ 1.12
SF3A1-202ENST00000411423 RRP36Q96EU6 259 aaKnown RBP22.05■■□□□ 1.12
SF3A1-202ENST00000411423 MAP3K20Q9NYL2 800 aaKnown RBP22.05■■□□□ 1.12
SF3A1-202ENST00000411423 A6NJR5 290 aa22.04■■□□□ 1.12
SF3A1-202ENST00000411423 NKRFO15226 690 aaKnown RBP eCLIP22.04■■□□□ 1.12
SF3A1-202ENST00000411423 ZEB2O60315 1214 aa22.04■■□□□ 1.12
SF3A1-202ENST00000411423 MYL3P08590 195 aa22.04■■□□□ 1.12
SF3A1-202ENST00000411423 MYCLP12524 364 aaPredicted RBP22.04■■□□□ 1.12
SF3A1-202ENST00000411423 GNAQP50148 359 aa22.04■■□□□ 1.12
SF3A1-202ENST00000411423 FUT2Q10981 343 aa22.04■■□□□ 1.12
SF3A1-202ENST00000411423 TTLL4Q14679 1199 aa22.04■■□□□ 1.12
SF3A1-202ENST00000411423 SHHQ15465 462 aa22.04■■□□□ 1.12
SF3A1-202ENST00000411423 LRIT3Q3SXY7 679 aa22.04■■□□□ 1.12
SF3A1-202ENST00000411423 SAMD3Q8N6K7 520 aa22.04■■□□□ 1.12
SF3A1-202ENST00000411423 LZTS2Q9BRK4 669 aa22.04■■□□□ 1.12
SF3A1-202ENST00000411423 FAM217BQ9NTX9 383 aaPredicted RBP22.04■■□□□ 1.12
SF3A1-202ENST00000411423 DDX41Q9UJV9 622 aaKnown RBP22.04■■□□□ 1.12
SF3A1-202ENST00000411423 CNTNAP5Q8WYK1 1306 aa22.04■■□□□ 1.12
SF3A1-202ENST00000411423 MEIS2O14770 477 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms