RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 CHURC1Q8WUH1 139 aa23.23■■□□□ 1.31
USP39-203ENST00000409470 GJA10Q969M2 543 aa23.23■■□□□ 1.31
USP39-203ENST00000409470 CD2APQ9Y5K6 639 aa23.23■■□□□ 1.31
USP39-203ENST00000409470 ASNSP08243 561 aa23.23■■□□□ 1.31
USP39-203ENST00000409470 ARHGAP4P98171 946 aa23.23■■□□□ 1.31
USP39-203ENST00000409470 PDE4DQ08499 809 aa23.23■■□□□ 1.31
USP39-203ENST00000409470 GIMAP8Q8ND71 665 aaPredicted RBP23.23■■□□□ 1.31
USP39-203ENST00000409470 C16orf45Q96MC5 204 aaPredicted RBP23.23■■□□□ 1.31
USP39-203ENST00000409470 CYP3A7-CYP3A51PA0A087WV96 503 aa23.22■■□□□ 1.31
USP39-203ENST00000409470 CYP3A7P24462 503 aa23.22■■□□□ 1.31
USP39-203ENST00000409470 TNFAIP1Q13829 316 aa23.22■■□□□ 1.31
USP39-203ENST00000409470 APTXQ7Z2E3 356 aaKnown RBP23.22■■□□□ 1.31
USP39-203ENST00000409470 LARP4BQ92615 738 aaKnown RBP23.22■■□□□ 1.31
USP39-203ENST00000409470 KIFC2Q96AC6 838 aa23.22■■□□□ 1.31
USP39-203ENST00000409470 NUDT12Q9BQG2 462 aa23.22■■□□□ 1.31
USP39-203ENST00000409470 BLOC1S4Q9NUP1 217 aa23.22■■□□□ 1.31
USP39-203ENST00000409470 PSMA7O14818 248 aa23.21■■□□□ 1.31
USP39-203ENST00000409470 MAP3K10Q02779 954 aa23.21■■□□□ 1.31
USP39-203ENST00000409470 RASSF7Q02833 373 aa23.21■■□□□ 1.31
USP39-203ENST00000409470 MCM6Q14566 821 aa23.21■■□□□ 1.31
USP39-203ENST00000409470 MOXD1Q6UVY6 613 aa23.21■■□□□ 1.31
USP39-203ENST00000409470 UIMC1Q96RL1 719 aa23.21■■□□□ 1.31
USP39-203ENST00000409470 P2RX7Q99572 595 aaKnown RBP23.21■■□□□ 1.31
USP39-203ENST00000409470 GJA3Q9Y6H8 435 aa23.21■■□□□ 1.31
USP39-203ENST00000409470 EGFRP00533 1210 aa23.21■■□□□ 1.31
USP39-203ENST00000409470 CCDC174Q6PII3 467 aa23.21■■□□□ 1.31
USP39-203ENST00000409470 CCDC112Q8NEF3 446 aa23.21■■□□□ 1.31
USP39-203ENST00000409470 ANKRD20A12PQ8NF67 263 aa23.21■■□□□ 1.31
USP39-203ENST00000409470 ADD3Q9UEY8 706 aaKnown RBP23.21■■□□□ 1.31
USP39-203ENST00000409470 TPM2P07951 284 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 HOXA13P31271 388 aaPredicted RBP23.2■■□□□ 1.3
USP39-203ENST00000409470 GMPSP49915 693 aaPredicted RBP23.2■■□□□ 1.3
USP39-203ENST00000409470 SPAG1Q07617 926 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 TBX2Q13207 712 aaPredicted RBP23.2■■□□□ 1.3
USP39-203ENST00000409470 SAMD1Q6SPF0 538 aaPredicted RBP23.2■■□□□ 1.3
USP39-203ENST00000409470 MICALL2Q8IY33 904 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 RAD54LQ92698 747 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 MBOAT7Q96N66 472 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 GLIS2Q9BZE0 524 aaPredicted RBP23.2■■□□□ 1.3
USP39-203ENST00000409470 GTPBP4Q9BZE4 634 aaKnown RBP23.2■■□□□ 1.3
USP39-203ENST00000409470 KCNMB3Q9NPA1 279 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 USP27XA6NNY8 438 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 H7C1D1 291 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 OPLAHO14841 1288 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 GOLGA8FQ08AF8 430 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 GOLGA8DPQ0D2H9 430 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 TMEM119Q4V9L6 283 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 PRR16Q569H4 304 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 CCDC84Q86UT8 332 aaPredicted RBP23.2■■□□□ 1.3
USP39-203ENST00000409470 CREBRFQ8IUR6 639 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 SLFN12Q8IYM2 578 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 CRYGNQ8WXF5 182 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 FEZ1Q99689 392 aa23.2■■□□□ 1.3
USP39-203ENST00000409470 TRMT1Q9NXH9 659 aaKnown RBP23.2■■□□□ 1.3
USP39-203ENST00000409470 TRIM49BA6NDI0 452 aa23.19■■□□□ 1.3
USP39-203ENST00000409470 TEX33O43247 280 aa23.19■■□□□ 1.3
USP39-203ENST00000409470 SREBF1P36956 1147 aa23.19■■□□□ 1.3
USP39-203ENST00000409470 FAM160B2Q86V87 743 aa23.19■■□□□ 1.3
USP39-203ENST00000409470 CCAR2Q8N163 923 aaKnown RBP23.19■■□□□ 1.3
USP39-203ENST00000409470 PRIMPOLQ96LW4 560 aa23.19■■□□□ 1.3
USP39-203ENST00000409470 LIMA1Q9UHB6 759 aaKnown RBP23.19■■□□□ 1.3
USP39-203ENST00000409470 LTBP3Q9NS15 1303 aa23.19■■□□□ 1.3
USP39-203ENST00000409470 MYMKA6NI61 221 aa23.18■■□□□ 1.3
USP39-203ENST00000409470 CCT6AP40227 531 aaKnown RBP23.18■■□□□ 1.3
USP39-203ENST00000409470 KRT31Q15323 416 aa23.18■■□□□ 1.3
USP39-203ENST00000409470 CNNM4Q6P4Q7 775 aa23.18■■□□□ 1.3
USP39-203ENST00000409470 SAMD7Q7Z3H4 446 aa23.18■■□□□ 1.3
USP39-203ENST00000409470 DHTKD1Q96HY7 919 aaPredicted RBP23.18■■□□□ 1.3
USP39-203ENST00000409470 LRRC27Q9C0I9 530 aa23.18■■□□□ 1.3
USP39-203ENST00000409470 RANBP17Q9H2T7 1088 aaKnown RBP23.18■■□□□ 1.3
USP39-203ENST00000409470 FEM1BQ9UK73 627 aa23.18■■□□□ 1.3
USP39-203ENST00000409470 KDM3AQ9Y4C1 1321 aa23.18■■□□□ 1.3
USP39-203ENST00000409470 KCNJ18B7U540 433 aa23.18■■□□□ 1.3
USP39-203ENST00000409470 TNNT1P13805 278 aa23.18■■□□□ 1.3
USP39-203ENST00000409470 KCNJ12Q14500 433 aa23.18■■□□□ 1.3
USP39-203ENST00000409470 TBC1D10BQ4KMP7 808 aaPredicted RBP23.18■■□□□ 1.3
USP39-203ENST00000409470 TCP11X2Q5H9J9 407 aa23.18■■□□□ 1.3
USP39-203ENST00000409470 SGIP1Q9BQI5 828 aa23.18■■□□□ 1.3
USP39-203ENST00000409470 ZNF341Q9BYN7 854 aa23.18■■□□□ 1.3
USP39-203ENST00000409470 CNOT7Q9UIV1 285 aaKnown RBP23.18■■□□□ 1.3
USP39-203ENST00000409470 PHF20L1A8MW92 1017 aa23.17■■□□□ 1.3
USP39-203ENST00000409470 PIK3CDO00329 1044 aa23.17■■□□□ 1.3
USP39-203ENST00000409470 PLA2G6O60733 806 aa23.17■■□□□ 1.3
USP39-203ENST00000409470 STK4Q13043 487 aa23.17■■□□□ 1.3
USP39-203ENST00000409470 ECM1Q16610 540 aa23.17■■□□□ 1.3
USP39-203ENST00000409470 Q4G0T1 1027 aa23.17■■□□□ 1.3
USP39-203ENST00000409470 DYMQ7RTS9 669 aa23.17■■□□□ 1.3
USP39-203ENST00000409470 FCHSD1Q86WN1 690 aa23.17■■□□□ 1.3
USP39-203ENST00000409470 TRIM47Q96LD4 638 aa23.17■■□□□ 1.3
USP39-203ENST00000409470 TEPSINQ96N21 525 aa23.17■■□□□ 1.3
USP39-203ENST00000409470 NT5C3AQ9H0P0 336 aa23.17■■□□□ 1.3
USP39-203ENST00000409470 KCND1Q9NSA2 647 aa23.17■■□□□ 1.3
USP39-203ENST00000409470 UQCRHLA0A096LP55 91 aa23.16■■□□□ 1.3
USP39-203ENST00000409470 N4BP3O15049 544 aa23.16■■□□□ 1.3
USP39-203ENST00000409470 CFBP00751 764 aa23.16■■□□□ 1.3
USP39-203ENST00000409470 UQCRHP07919 91 aa23.16■■□□□ 1.3
USP39-203ENST00000409470 PPP1R2P41236 205 aa23.16■■□□□ 1.3
USP39-203ENST00000409470 KCNJ6P48051 423 aa23.16■■□□□ 1.3
USP39-203ENST00000409470 PMS1P54277 932 aaKnown RBP23.16■■□□□ 1.3
USP39-203ENST00000409470 KCNK18Q7Z418 384 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms