RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 HSPA6P17066 643 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 U2AF2P26368 475 aaKnown RBP eCLIP7.83□□□□□ -1.16
UPF2-203ENST00000397053 OSTNP61366 133 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 GOLGA8FQ08AF8 430 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 GOLGA8DPQ0D2H9 430 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 PTPROQ16827 1216 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 TTC31Q49AM3 519 aaPredicted RBP7.83□□□□□ -1.16
UPF2-203ENST00000397053 GALNT17Q6IS24 598 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 SZRD1Q7Z422 152 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 BBOF1Q8ND07 529 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 CFAP61Q8NHU2 1237 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 DONSONQ9NYP3 566 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 MAGED2Q9UNF1 606 aaPredicted RBP7.83□□□□□ -1.16
UPF2-203ENST00000397053 SOS2Q07890 1332 aaPredicted RBP7.82□□□□□ -1.16
UPF2-203ENST00000397053 ZMYM3Q14202 1370 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 GOLGA8QA0A0J9YX86 632 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 GOLGA8OA6NCC3 632 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 GOLGA8NF8WBI6 632 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 GNAT1P11488 350 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 ATF2P15336 505 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 KPNA2P52292 529 aaKnown RBP7.82□□□□□ -1.16
UPF2-203ENST00000397053 TBC1D10BQ4KMP7 808 aaPredicted RBP7.82□□□□□ -1.16
UPF2-203ENST00000397053 KSR1Q8IVT5 923 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 IFNL3Q8IZI9 196 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 TTLL6Q8N841 843 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 LZICQ8WZA0 190 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 CARD6Q9BX69 1037 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 SERTAD1Q9UHV2 236 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 DISP3Q9P2K9 1392 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 BUB1BO60566 1050 aaPredicted RBP7.82□□□□□ -1.16
UPF2-203ENST00000397053 GDF11O95390 407 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 GNL1P36915 607 aaPredicted RBP7.82□□□□□ -1.16
UPF2-203ENST00000397053 CHRNDQ07001 517 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 MTERF2Q49AM1 385 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 ADAT2Q7Z6V5 191 aaKnown RBP7.82□□□□□ -1.16
UPF2-203ENST00000397053 RNF10Q8N5U6 811 aaKnown RBP7.82□□□□□ -1.16
UPF2-203ENST00000397053 GPKOWQ92917 476 aaPredicted RBP eCLIP7.82□□□□□ -1.164e-6■■□□□ 12
UPF2-203ENST00000397053 BAG2O95816 211 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 MYL3P08590 195 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 OCM2P0CE71 109 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 OCMP0CE72 109 aaPredicted RBP7.82□□□□□ -1.16
UPF2-203ENST00000397053 INPP5BP32019 993 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 CTNNA1P35221 906 aaKnown RBP7.82□□□□□ -1.16
UPF2-203ENST00000397053 PSMD2Q13200 908 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 OR6B2Q6IFH4 312 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 CMTR1Q8N1G2 835 aaKnown RBP7.82□□□□□ -1.16
UPF2-203ENST00000397053 SERPINB13Q9UIV8 391 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.82□□□□□ -1.16
UPF2-203ENST00000397053 BMP3P12645 472 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 NLRP12P59046 1061 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 POLR2FP61218 127 aaKnown RBP7.82□□□□□ -1.16
UPF2-203ENST00000397053 ARL13BQ3SXY8 428 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 FAM182BQ5T319 152 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 ANGPTL8Q6UXH0 198 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 LBHD1Q9BQE6 289 aaPredicted RBP7.82□□□□□ -1.16
UPF2-203ENST00000397053 KIAA1024Q9UPX6 916 aa7.82□□□□□ -1.16
UPF2-203ENST00000397053 LMNB2Q03252 620 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 EXOC3L4Q17RC7 722 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 SCN4BQ8IWT1 228 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 VPS39Q96JC1 886 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 NLRP4Q96MN2 994 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 NR1H4Q96RI1 486 aaPredicted RBP7.81□□□□□ -1.16
UPF2-203ENST00000397053 PRDM5Q9NQX1 630 aaPredicted RBP7.81□□□□□ -1.16
UPF2-203ENST00000397053 ORC6Q9Y5N6 252 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 E7EWF7 191 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 MTX1Q13505 466 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 RSBN1LQ6PCB5 846 aaPredicted RBP7.81□□□□□ -1.16
UPF2-203ENST00000397053 YAF2Q8IY57 180 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 FAM186BQ8IYM0 893 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 TRIM58Q8NG06 486 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 UHMK1Q8TAS1 419 aaKnown RBP7.81□□□□□ -1.16
UPF2-203ENST00000397053 PPWD1Q96BP3 646 aaKnown RBP7.81□□□□□ -1.16
UPF2-203ENST00000397053 ERO1AQ96HE7 468 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 DSCC1Q9BVC3 393 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 CALN1Q9BXU9 219 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 DPH5Q9H2P9 285 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 SUDS3Q9H7L9 328 aaPredicted RBP7.81□□□□□ -1.16
UPF2-203ENST00000397053 SLC39A2Q9NP94 309 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 SGK1O00141 431 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 SGSM2O43147 1006 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 ESRRBO95718 433 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 HSPA8P11142 646 aaKnown RBP7.81□□□□□ -1.16
UPF2-203ENST00000397053 MESDQ14696 234 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 MIGA2Q7L4E1 593 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 PCGF5Q86SE9 256 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 RTKN2Q8IZC4 609 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 THEM5Q8N1Q8 247 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 ZBTB38Q8NAP3 1195 aaPredicted RBP7.81□□□□□ -1.16
UPF2-203ENST00000397053 PI4K2BQ8TCG2 481 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 KRT82Q9NSB4 513 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 DENND3A2RUS2 1198 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 CPP00450 1065 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 SRGAP2CP0DJJ0 459 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 EEF1GP26641 437 aaKnown RBP7.81□□□□□ -1.16
UPF2-203ENST00000397053 CCND2P30279 289 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 FOXD4Q12950 439 aaPredicted RBP7.81□□□□□ -1.16
UPF2-203ENST00000397053 SLC10A5Q5PT55 438 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 ARHGEF18Q6ZSZ5 1173 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 USP26Q9BXU7 913 aa7.81□□□□□ -1.16
UPF2-203ENST00000397053 MRPL46Q9H2W6 279 aaKnown RBP7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms