RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 ANO3Q9BYT9 981 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 ADD3Q9UEY8 706 aaKnown RBP12.47□□□□□ -0.41
TCOF1-203ENST00000394269 A0A1B0GTH6 734 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 MYMKA6NI61 221 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 E9PMD0 336 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 DYNC1I1O14576 645 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 GRB10Q13322 594 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 TCP11X2Q5H9J9 407 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 MTMR9Q96QG7 549 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 PIM2Q9P1W9 311 aa12.47□□□□□ -0.41
TCOF1-203ENST00000394269 CHMP2AO43633 222 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 MTIF2P46199 727 aaKnown RBP12.46□□□□□ -0.41
TCOF1-203ENST00000394269 COPB1P53618 953 aaKnown RBP12.46□□□□□ -0.41
TCOF1-203ENST00000394269 ECM1Q16610 540 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 KIAA1755Q5JYT7 1200 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 NCAPH2Q6IBW4 605 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 CPXCR1Q8N123 301 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 ADSSL1Q8N142 457 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 DCAF4Q8WV16 495 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 MRIQ9BWK5 157 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 ARHGEF10LQ9HCE6 1279 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 PKD2L1Q9P0L9 805 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 ZNRF3Q9ULT6 936 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 LAMB1P07942 1786 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 MAST2Q6P0Q8 1798 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 NPHP3-ACAD11A0A0J9YXS1 232 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 KLRC4O43908 158 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 ENTPD3O75355 529 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 EGFRP00533 1210 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 DGKZQ13574 1117 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 HAS1Q92839 578 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 HOMER2Q9NSB8 354 aa12.46□□□□□ -0.41
TCOF1-203ENST00000394269 POTEB3A0JP26 581 aa12.46□□□□□ -0.42
TCOF1-203ENST00000394269 POTECB2RU33 542 aa12.46□□□□□ -0.42
TCOF1-203ENST00000394269 hCG_1984214I3L0E3 225 aa12.46□□□□□ -0.42
TCOF1-203ENST00000394269 KCNA3P22001 575 aa12.46□□□□□ -0.42
TCOF1-203ENST00000394269 PPP4R3BQ5MIZ7 849 aa12.46□□□□□ -0.42
TCOF1-203ENST00000394269 ANKRD40Q6AI12 368 aa12.46□□□□□ -0.42
TCOF1-203ENST00000394269 POTEBQ6S5H4 581 aa12.46□□□□□ -0.42
TCOF1-203ENST00000394269 ZNF713Q8N859 430 aaPredicted RBP12.46□□□□□ -0.42
TCOF1-203ENST00000394269 GLIS3Q8NEA6 775 aa12.46□□□□□ -0.42
TCOF1-203ENST00000394269 DDX12PQ92771 950 aa12.46□□□□□ -0.42
TCOF1-203ENST00000394269 PRR12Q9ULL5 1215 aa12.46□□□□□ -0.42
TCOF1-203ENST00000394269 FZD1Q9UP38 647 aa12.46□□□□□ -0.42
TCOF1-203ENST00000394269 ADAMTSL1Q8N6G6 1762 aa12.46□□□□□ -0.42
TCOF1-203ENST00000394269 PLIN4Q96Q06 1357 aa12.45□□□□□ -0.42
TCOF1-203ENST00000394269 B4DLN1 442 aa12.45□□□□□ -0.42
TCOF1-203ENST00000394269 URI1O94763 535 aaPredicted RBP12.45□□□□□ -0.42
TCOF1-203ENST00000394269 FXR1P51114 621 aaKnown RBP eCLIP12.45□□□□□ -0.42
TCOF1-203ENST00000394269 STAT2P52630 851 aa12.45□□□□□ -0.42
TCOF1-203ENST00000394269 TERF1P54274 439 aa12.45□□□□□ -0.42
TCOF1-203ENST00000394269 GNG11P61952 73 aa12.45□□□□□ -0.42
TCOF1-203ENST00000394269 ARHGAP4P98171 946 aa12.45□□□□□ -0.42
TCOF1-203ENST00000394269 CDKAL1Q5VV42 579 aa12.45□□□□□ -0.42
TCOF1-203ENST00000394269 SAMD7Q7Z3H4 446 aa12.45□□□□□ -0.42
TCOF1-203ENST00000394269 NELFCDQ8IXH7 590 aa12.45□□□□□ -0.42
TCOF1-203ENST00000394269 MKL1Q969V6 931 aa12.45□□□□□ -0.42
TCOF1-203ENST00000394269 PNMA5Q96PV4 448 aa12.45□□□□□ -0.42
TCOF1-203ENST00000394269 IRX2Q9BZI1 471 aaPredicted RBP12.45□□□□□ -0.42
TCOF1-203ENST00000394269 PAXBP1Q9Y5B6 917 aa12.45□□□□□ -0.42
TCOF1-203ENST00000394269 TBC1D10BQ4KMP7 808 aaPredicted RBP12.45□□□□□ -0.42
TCOF1-203ENST00000394269 P2RX7Q99572 595 aaKnown RBP12.45□□□□□ -0.42
TCOF1-203ENST00000394269 BLOC1S4Q9NUP1 217 aa12.45□□□□□ -0.42
TCOF1-203ENST00000394269 PPP2R2CQ9Y2T4 447 aa12.45□□□□□ -0.42
TCOF1-203ENST00000394269 MEIS2O14770 477 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 VIL1P09327 827 aaKnown RBP12.44□□□□□ -0.42
TCOF1-203ENST00000394269 DALRD3Q5D0E6 543 aaKnown RBP12.44□□□□□ -0.42
TCOF1-203ENST00000394269 APTXQ7Z2E3 356 aaKnown RBP12.44□□□□□ -0.42
TCOF1-203ENST00000394269 MORC2Q9Y6X9 1032 aaPredicted RBP12.44□□□□□ -0.42
TCOF1-203ENST00000394269 SCN9AQ15858 1988 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 A0A0U1RQJ8 604 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 H7C1D1 291 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 RNF225M0QZC1 329 aaPredicted RBP12.44□□□□□ -0.42
TCOF1-203ENST00000394269 WNT10BO00744 389 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 ARHGAP6O43182 974 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 KRT9P35527 623 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 PRKG1Q13976 671 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 NYAP1Q6ZVC0 841 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 GIMAP8Q8ND71 665 aaPredicted RBP12.44□□□□□ -0.42
TCOF1-203ENST00000394269 FAM151AQ8WW52 585 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 ATRIPQ8WXE1 791 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 TANGO6Q9C0B7 1094 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 BMP2KQ9NSY1 1161 aaPredicted RBP12.44□□□□□ -0.42
TCOF1-203ENST00000394269 ZNF215Q9UL58 517 aaPredicted RBP12.44□□□□□ -0.42
TCOF1-203ENST00000394269 POTEFA5A3E0 1075 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 NKRFO15226 690 aaKnown RBP eCLIP12.44□□□□□ -0.42
TCOF1-203ENST00000394269 RHOBTB3O94955 611 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 POTEIP0CG38 1075 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 FKBP1AP62942 108 aaKnown RBP12.44□□□□□ -0.42
TCOF1-203ENST00000394269 RASA3Q14644 834 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 POTEGQ6S5H5 508 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 POTEEQ6S8J3 1075 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 ZBTB21Q9ULJ3 1066 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 MYO3BQ8WXR4 1341 aa12.44□□□□□ -0.42
TCOF1-203ENST00000394269 TBC1D8BQ0IIM8 1120 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 GRM1Q13255 1194 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 PABPC4Q13310 644 aaKnown RBP eCLIP12.43□□□□□ -0.42
TCOF1-203ENST00000394269 CIAPIN1Q6FI81 312 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 TAOK3Q9H2K8 898 aa12.43□□□□□ -0.42
TCOF1-203ENST00000394269 ASTN2O75129 1339 aaPredicted RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms