RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 SPATA20Q8TB22 786 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 RNF217Q8TC41 542 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 BCAS4Q8TDM0 211 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 RIN2Q8WYP3 895 aaPredicted RBP12.42□□□□□ -0.42
CUX1-204ENST00000393824 WASF1Q92558 559 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 CTAGE1Q96RT6 745 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 SH3GL2Q99962 352 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 CRACR2AQ9BSW2 395 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 LY9Q9HBG7 655 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 IL17RBQ9NRM6 502 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 GOLGA6AQ9NYA3 693 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 LAMB1P07942 1786 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 GRIN2DO15399 1336 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 SH2B2O14492 632 aaPredicted RBP12.42□□□□□ -0.42
CUX1-204ENST00000393824 CDK8P49336 464 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 FNTAP49354 379 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 AKAP17AQ02040 695 aaKnown RBP12.42□□□□□ -0.42
CUX1-204ENST00000393824 RRP1BQ14684 758 aaKnown RBP12.42□□□□□ -0.42
CUX1-204ENST00000393824 GPC2Q8N158 579 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 CABS1Q96KC9 395 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 CAPS2Q9BXY5 557 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 GPRC5DQ9NZD1 345 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 HDAC9Q9UKV0 1011 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 MYH1P12882 1939 aa12.41□□□□□ -0.42
CUX1-204ENST00000393824 SIPA1L1O43166 1804 aa12.41□□□□□ -0.42
CUX1-204ENST00000393824 ECM29Q5VYK3 1845 aa12.41□□□□□ -0.42
CUX1-204ENST00000393824 DICER1Q9UPY3 1922 aaKnown RBP12.41□□□□□ -0.42
CUX1-204ENST00000393824 IRF6O14896 467 aa12.41□□□□□ -0.42
CUX1-204ENST00000393824 CASP14P31944 242 aa12.41□□□□□ -0.42
CUX1-204ENST00000393824 JAG1P78504 1218 aa12.41□□□□□ -0.42
CUX1-204ENST00000393824 SETQ01105 290 aaPredicted RBP12.41□□□□□ -0.42
CUX1-204ENST00000393824 SKIDA1Q1XH10 827 aa12.41□□□□□ -0.42
CUX1-204ENST00000393824 C16orf86Q6ZW13 317 aa12.41□□□□□ -0.42
CUX1-204ENST00000393824 SPATS2Q86XZ4 545 aaKnown RBP12.41□□□□□ -0.42
CUX1-204ENST00000393824 ENAHQ8N8S7 591 aaPredicted RBP12.41□□□□□ -0.42
CUX1-204ENST00000393824 MTMR14Q8NCE2 650 aa12.41□□□□□ -0.42
CUX1-204ENST00000393824 ACRBPQ8NEB7 543 aa12.41□□□□□ -0.42
CUX1-204ENST00000393824 ORC4O43929 436 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 FSBPO95073 299 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 GYPCP04921 128 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 RPS12P25398 132 aaKnown RBP12.4□□□□□ -0.42
CUX1-204ENST00000393824 SHMT1P34896 483 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 SEC23AQ15436 765 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 PRAMEF18Q5VWM3 479 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 SPATA1Q5VX52 437 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 RCSD1Q6JBY9 416 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 CCNI2Q6ZMN8 369 aaPredicted RBP12.4□□□□□ -0.42
CUX1-204ENST00000393824 SGMS1Q86VZ5 419 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 ZSCAN29Q8IWY8 852 aaPredicted RBP12.4□□□□□ -0.42
CUX1-204ENST00000393824 AMOTL1Q8IY63 956 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 CPLX3Q8WVH0 158 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 TNKSO95271 1327 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 IFIT3O14879 490 aaKnown RBP12.4□□□□□ -0.42
CUX1-204ENST00000393824 PTPREP23469 700 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 FXR1P51114 621 aaKnown RBP eCLIP12.4□□□□□ -0.42
CUX1-204ENST00000393824 ERVK-24P63145 666 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 TFAP4Q01664 338 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 NTRK3Q16288 839 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 TMEM67Q5HYA8 995 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 CDKAL1Q5VV42 579 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 APOA5Q6Q788 366 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 B4GALNT4Q76KP1 1039 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 SGSM3Q96HU1 749 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 SELENOOQ9BVL4 669 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 KRT23Q9C075 422 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 RNF41Q9H4P4 317 aaPredicted RBP12.4□□□□□ -0.42
CUX1-204ENST00000393824 CNNM2Q9H8M5 875 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 PGAP2Q9UHJ9 254 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 SERPINB13Q9UIV8 391 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 FZD1Q9UP38 647 aa12.4□□□□□ -0.42
CUX1-204ENST00000393824 UBE2Q2LH0YL09 131 aa12.39□□□□□ -0.43
CUX1-204ENST00000393824 FILIP1LQ4L180 1135 aa12.39□□□□□ -0.43
CUX1-204ENST00000393824 PAPD7Q5XG87 772 aaKnown RBP12.39□□□□□ -0.43
CUX1-204ENST00000393824 CYP26C1Q6V0L0 522 aa12.39□□□□□ -0.43
CUX1-204ENST00000393824 ESR2Q92731 530 aa12.39□□□□□ -0.43
CUX1-204ENST00000393824 RBM28Q9NW13 759 aaKnown RBP12.39□□□□□ -0.43
CUX1-204ENST00000393824 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.39□□□□□ -0.43
CUX1-204ENST00000393824 NID2Q14112 1375 aa12.39□□□□□ -0.43
CUX1-204ENST00000393824 GOLGA6BA6NDN3 693 aa12.39□□□□□ -0.43
CUX1-204ENST00000393824 ZBTB43O43298 467 aa12.39□□□□□ -0.43
CUX1-204ENST00000393824 AKR1B1P15121 316 aa12.39□□□□□ -0.43
CUX1-204ENST00000393824 LIFRP42702 1097 aa12.39□□□□□ -0.43
CUX1-204ENST00000393824 SKOR1P84550 965 aa12.39□□□□□ -0.43
CUX1-204ENST00000393824 MIGA2Q7L4E1 593 aa12.39□□□□□ -0.43
CUX1-204ENST00000393824 NOSTRINQ8IVI9 506 aa12.39□□□□□ -0.43
CUX1-204ENST00000393824 CSRNP1Q96S65 589 aa12.39□□□□□ -0.43
CUX1-204ENST00000393824 ZSCAN10Q96SZ4 725 aaPredicted RBP12.39□□□□□ -0.43
CUX1-204ENST00000393824 MMS19Q96T76 1030 aa12.39□□□□□ -0.43
CUX1-204ENST00000393824 MKNK2Q9HBH9 465 aa12.39□□□□□ -0.43
CUX1-204ENST00000393824 HACL1Q9UJ83 578 aa12.39□□□□□ -0.43
CUX1-204ENST00000393824 TSPY2A6NKD2 308 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 GOLGA8KD6RF30 607 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 PPP1R12AO14974 1030 aaPredicted RBP12.38□□□□□ -0.43
CUX1-204ENST00000393824 SAFBQ15424 915 aaKnown RBP eCLIP12.38□□□□□ -0.43
CUX1-204ENST00000393824 RILPL1Q5EBL4 403 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 YTHDF3Q7Z739 585 aaKnown RBP12.38□□□□□ -0.43
CUX1-204ENST00000393824 MICU3Q86XE3 530 aa12.38□□□□□ -0.43
CUX1-204ENST00000393824 CMTR1Q8N1G2 835 aaKnown RBP12.38□□□□□ -0.43
CUX1-204ENST00000393824 JPH2Q9BR39 696 aaPredicted RBP12.38□□□□□ -0.43
CUX1-204ENST00000393824 PAGR1Q9BTK6 254 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms