RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 INIPQ9NRY2 104 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 ITGB1BP2Q9UKP3 347 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 RBM8AQ9Y5S9 174 aaKnown RBP10.28□□□□□ -0.76
PTPRA-204ENST00000380393 EP400Q96L91 3159 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 HTR3EA5X5Y0 456 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 TOM1O60784 492 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 HIP1RO75146 1068 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 CCNG1P51959 295 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 LACTBP83111 547 aaPredicted RBP10.28□□□□□ -0.76
PTPRA-204ENST00000380393 ATP11AP98196 1134 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 CKAP4Q07065 602 aaKnown RBP10.28□□□□□ -0.76
PTPRA-204ENST00000380393 OR52E8Q6IFG1 317 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 GIGYF2Q6Y7W6 1299 aaKnown RBP10.28□□□□□ -0.76
PTPRA-204ENST00000380393 MLKLQ8NB16 471 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 SLC43A3Q8NBI5 491 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 DEPTORQ8TB45 409 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 BRF1Q92994 677 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 INTS13Q9NVM9 706 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 SRGAP2O75044 1071 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 GSTA1P08263 222 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 NQO1P15559 274 aaKnown RBP10.28□□□□□ -0.76
PTPRA-204ENST00000380393 SARSP49591 514 aaKnown RBP10.28□□□□□ -0.76
PTPRA-204ENST00000380393 KCNJ2P63252 427 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 GRAMD4Q6IC98 578 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 NSUN7Q8NE18 718 aaKnown RBP10.28□□□□□ -0.76
PTPRA-204ENST00000380393 FBF1Q8TES7 1133 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 MRPS27Q92552 414 aaKnown RBP10.28□□□□□ -0.76
PTPRA-204ENST00000380393 RPGRIP1Q96KN7 1286 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 RMND1Q9NWS8 449 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 TTF2Q9UNY4 1162 aaKnown RBP10.28□□□□□ -0.76
PTPRA-204ENST00000380393 STK38LQ9Y2H1 464 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 IGSF1Q8N6C5 1336 aa10.28□□□□□ -0.76
PTPRA-204ENST00000380393 A8MUI8 341 aa10.27□□□□□ -0.76
PTPRA-204ENST00000380393 ATP6V1C1P21283 382 aa10.27□□□□□ -0.76
PTPRA-204ENST00000380393 GUCY2DQ02846 1103 aa10.27□□□□□ -0.76
PTPRA-204ENST00000380393 SF3A3Q12874 501 aaKnown RBP eCLIP10.27□□□□□ -0.769e-7■■■□□ 18.6
PTPRA-204ENST00000380393 RUFY4Q6ZNE9 571 aa10.27□□□□□ -0.76
PTPRA-204ENST00000380393 CPLX3Q8WVH0 158 aa10.27□□□□□ -0.76
PTPRA-204ENST00000380393 PUS3Q9BZE2 481 aaKnown RBP10.27□□□□□ -0.76
PTPRA-204ENST00000380393 STAP2Q9UGK3 403 aa10.27□□□□□ -0.76
PTPRA-204ENST00000380393 RCOR1Q9UKL0 485 aa10.27□□□□□ -0.76
PTPRA-204ENST00000380393 ZNF711Q9Y462 761 aa10.27□□□□□ -0.76
PTPRA-204ENST00000380393 STK24Q9Y6E0 443 aa10.27□□□□□ -0.76
PTPRA-204ENST00000380393 SALL3Q9BXA9 1300 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 TRAPPC3O43617 180 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 IDO1P14902 403 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 EPHB4P54760 987 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 KIF5AQ12840 1032 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 CFAP157Q5JU67 520 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 RC3H1Q5TC82 1133 aaKnown RBP10.27□□□□□ -0.77
PTPRA-204ENST00000380393 OLFML2BQ68BL8 750 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 PPP2R3CQ969Q6 453 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 NACC2Q96BF6 587 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 FAM227BQ96M60 508 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 SH3GL1Q99961 368 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 PRELID1Q9Y255 219 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 LTN1O94822 1766 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 AKR1B15C9JRZ8 316 aaPredicted RBP10.27□□□□□ -0.77
PTPRA-204ENST00000380393 GNA14O95837 355 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 GSTA2P09210 222 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 GSTM4Q03013 218 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 FXNQ16595 210 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 UBE3BQ7Z3V4 1068 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 FMR1NBQ8N0W7 255 aaPredicted RBP10.27□□□□□ -0.77
PTPRA-204ENST00000380393 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.27□□□□□ -0.77
PTPRA-204ENST00000380393 IFT43Q96FT9 208 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 ATP6V1G3Q96LB4 118 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 CCDC43Q96MW1 224 aaKnown RBP10.27□□□□□ -0.77
PTPRA-204ENST00000380393 SIKE1Q9BRV8 207 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 PFDN4Q9NQP4 134 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 SAR1BQ9Y6B6 198 aa10.27□□□□□ -0.77
PTPRA-204ENST00000380393 ROBO1Q9Y6N7 1651 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 CCNFP41002 786 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 MTTPP55157 894 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 PAK2Q13177 524 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 DDB1Q16531 1140 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 MPRIPQ6WCQ1 1025 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 TRAPPC11Q7Z392 1133 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 CCDC197Q8NCU1 140 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 SLC7A5P2Q9GIP4 190 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 LGR6Q9HBX8 967 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 CCDC87Q9NVE4 849 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 BTG4Q9NY30 223 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 INTUQ9ULD6 942 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 LRRC42Q9Y546 428 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 RGPD2P0DJD1 1756 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 GNAT2P19087 354 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 VARSP26640 1264 aaKnown RBP10.26□□□□□ -0.77
PTPRA-204ENST00000380393 C2orf54Q08AI8 447 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 EMC10Q5UCC4 262 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 EMBQ6PCB8 327 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 ANKS4BQ8N8V4 417 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 PI4K2BQ8TCG2 481 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 RNF25Q96BH1 459 aaPredicted RBP10.26□□□□□ -0.77
PTPRA-204ENST00000380393 EXOC1Q9NV70 894 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 ARHGEF38Q9NXL2 777 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 SLC12A4Q9UP95 1085 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 CTDP1Q9Y5B0 961 aaPredicted RBP10.26□□□□□ -0.77
PTPRA-204ENST00000380393 ITIH6Q6UXX5 1313 aa10.26□□□□□ -0.77
PTPRA-204ENST00000380393 PHF20L1A8MW92 1017 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms