RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 PPIP5K2O43314 1243 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 RSPH10BP0C881 870 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 NUP107P57740 925 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 PUDPQ08623 228 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 CASP8Q14790 479 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 SLC9A5Q14940 896 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 DPH6Q7L8W6 267 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 KLHL23Q8NBE8 558 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 CD209Q9NNX6 404 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 MINK1Q8N4C8 1332 aaPredicted RBP9.45□□□□□ -0.9
LIG3-202ENST00000378526 A0A0B4J269 797 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 GMNCA6NCL1 334 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 KPNA4O00629 521 aaPredicted RBP9.45□□□□□ -0.9
LIG3-202ENST00000378526 PSMC6P62333 389 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 TUBB3Q13509 450 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 SLF1Q9BQI6 1058 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 SPG7Q9UQ90 795 aa9.45□□□□□ -0.9
LIG3-202ENST00000378526 NFIBO00712 420 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 CUTAO60888 179 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 PSMA3P25788 255 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 PAPOLAP51003 745 aaKnown RBP9.44□□□□□ -0.9
LIG3-202ENST00000378526 CATSPER3Q86XQ3 398 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 PSMB7Q99436 277 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 CAAP1Q9H8G2 361 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 NOP56O00567 594 aaKnown RBP9.44□□□□□ -0.9
LIG3-202ENST00000378526 OCM2P0CE71 109 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 OCMP0CE72 109 aaPredicted RBP9.44□□□□□ -0.9
LIG3-202ENST00000378526 KCNA2P16389 499 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 OTUB1Q96FW1 271 aaPredicted RBP9.44□□□□□ -0.9
LIG3-202ENST00000378526 B3GALT6Q96L58 329 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 LARP6Q9BRS8 491 aaKnown RBP9.44□□□□□ -0.9
LIG3-202ENST00000378526 LCA5LO95447 670 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 CDC27P30260 824 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 MLH1P40692 756 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 HADHQ16836 314 aaKnown RBP9.44□□□□□ -0.9
LIG3-202ENST00000378526 RNF34Q969K3 372 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 CHAMP1Q96JM3 812 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 BEGAINQ9BUH8 593 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 TRIM13O60858 407 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 KRT16P08779 473 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 TRIM49P0CI25 452 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 TRIM49CP0CI26 452 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 VCPP55072 806 aaKnown RBP9.44□□□□□ -0.9
LIG3-202ENST00000378526 SIX6OS1Q8N1H7 587 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 CALML6Q8TD86 181 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 SUN2Q9UH99 717 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 SMCO2A6NFE2 343 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 CDC40O60508 579 aaKnown RBP eCLIP9.44□□□□□ -0.9
LIG3-202ENST00000378526 HSPA1AP0DMV8 641 aaKnown RBP9.44□□□□□ -0.9
LIG3-202ENST00000378526 HSPA1BP0DMV9 641 aaKnown RBP9.44□□□□□ -0.9
LIG3-202ENST00000378526 CAPRIN1Q14444 709 aaKnown RBP9.44□□□□□ -0.9
LIG3-202ENST00000378526 KRT81Q14533 505 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 RUNDC3AQ59EK9 446 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 ACAD11Q709F0 780 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 PBKQ96KB5 322 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 VIPAS39Q9H9C1 493 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 H0Y3Z8 333 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 BEND3Q5T5X7 828 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 Q6ZUG5 572 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 C2CD5Q86YS7 1000 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 TEKT4Q8WW24 435 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 CCDC134Q9H6E4 229 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 RGL1Q9NZL6 768 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 ANAPC5Q9UJX4 755 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.44□□□□□ -0.9
LIG3-202ENST00000378526 FAM83GA6ND36 823 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 GOLGA8JA6NMD2 632 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 LRPAP1P30533 357 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 STAT1P42224 750 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 PPP1R13BQ96KQ4 1090 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 ECT2Q9H8V3 914 aa9.44□□□□□ -0.9
LIG3-202ENST00000378526 MEIS1O00470 390 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 S100A1P23297 94 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 DNM2P50570 870 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 RASSF7Q02833 373 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 TBCCQ15814 346 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 HAUS3Q68CZ6 603 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 EPAS1Q99814 870 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 ANKIB1Q9P2G1 1089 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 KCNH3Q9ULD8 1083 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 S100A6P06703 90 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 ACADSP16219 412 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 OCRLQ01968 901 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 POSTNQ15063 836 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 ADCK5Q3MIX3 580 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 PPP1R2P3Q6NXS1 205 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 TBC1D22AQ8WUA7 517 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 MTERF3Q96E29 417 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.43□□□□□ -0.9
LIG3-202ENST00000378526 TINF2Q9BSI4 451 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 PAPOLBQ9NRJ5 636 aaKnown RBP9.43□□□□□ -0.9
LIG3-202ENST00000378526 KCNG1Q9UIX4 513 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 ZNF652Q9Y2D9 606 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 KDM2BQ8NHM5 1336 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 TCF3P15923 654 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 MLECQ14165 292 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 POTEAQ6S8J7 498 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 TTLL7Q6ZT98 887 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 PBXIP1Q96AQ6 731 aa9.43□□□□□ -0.9
LIG3-202ENST00000378526 ZBTB10Q96DT7 871 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms