RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 LRWD1Q9UFC0 647 aa28.19■■■□□ 2.1
C9orf40-201ENST00000376854 MTMR9Q96QG7 549 aa28.18■■■□□ 2.1
C9orf40-201ENST00000376854 BLOC1S4Q9NUP1 217 aa28.18■■■□□ 2.1
C9orf40-201ENST00000376854 DUSP10Q9Y6W6 482 aa28.18■■■□□ 2.1
C9orf40-201ENST00000376854 DDX60LQ5H9U9 1706 aaKnown RBP28.18■■■□□ 2.1
C9orf40-201ENST00000376854 CRY2Q49AN0 593 aa28.18■■■□□ 2.1
C9orf40-201ENST00000376854 RPGRIP1Q96KN7 1286 aa28.18■■■□□ 2.1
C9orf40-201ENST00000376854 CCDC42Q96M95 316 aa28.18■■■□□ 2.1
C9orf40-201ENST00000376854 PURBQ96QR8 312 aaKnown RBP28.18■■■□□ 2.1
C9orf40-201ENST00000376854 MACROD2A1Z1Q3 448 aa28.17■■■□□ 2.1
C9orf40-201ENST00000376854 LRRIQ3A6PVS8 624 aaPredicted RBP28.17■■■□□ 2.1
C9orf40-201ENST00000376854 VAV2P52735 878 aa28.17■■■□□ 2.1
C9orf40-201ENST00000376854 KIF5AQ12840 1032 aa28.17■■■□□ 2.1
C9orf40-201ENST00000376854 CCDC102AQ96A19 550 aa28.17■■■□□ 2.1
C9orf40-201ENST00000376854 IQCDQ96DY2 449 aa28.17■■■□□ 2.1
C9orf40-201ENST00000376854 RIOX1Q9H6W3 641 aa28.17■■■□□ 2.1
C9orf40-201ENST00000376854 STK17AQ9UEE5 414 aa28.17■■■□□ 2.1
C9orf40-201ENST00000376854 ANO9A1A5B4 782 aa28.17■■■□□ 2.1
C9orf40-201ENST00000376854 MYMKA6NI61 221 aa28.17■■■□□ 2.1
C9orf40-201ENST00000376854 SERPINB2P05120 415 aa28.17■■■□□ 2.1
C9orf40-201ENST00000376854 RHBDL3P58872 404 aa28.17■■■□□ 2.1
C9orf40-201ENST00000376854 UNC13DQ70J99 1090 aa28.17■■■□□ 2.1
C9orf40-201ENST00000376854 CDK5RAP3Q96JB5 506 aa28.17■■■□□ 2.1
C9orf40-201ENST00000376854 GGA1Q9UJY5 639 aa28.17■■■□□ 2.1
C9orf40-201ENST00000376854 FRMPD2Q68DX3 1309 aaPredicted RBP28.16■■■□□ 2.1
C9orf40-201ENST00000376854 MCM3P25205 808 aa28.16■■■□□ 2.1
C9orf40-201ENST00000376854 SPA17Q15506 151 aa28.16■■■□□ 2.1
C9orf40-201ENST00000376854 VWA3BQ502W6 1294 aa28.16■■■□□ 2.1
C9orf40-201ENST00000376854 HSP90B2PQ58FF3 399 aa28.16■■■□□ 2.1
C9orf40-201ENST00000376854 CERKQ8TCT0 537 aa28.16■■■□□ 2.1
C9orf40-201ENST00000376854 LARP4BQ92615 738 aaKnown RBP28.16■■■□□ 2.1
C9orf40-201ENST00000376854 PNMA5Q96PV4 448 aa28.16■■■□□ 2.1
C9orf40-201ENST00000376854 TSGA10Q9BZW7 698 aa28.16■■■□□ 2.1
C9orf40-201ENST00000376854 ACBD3Q9H3P7 528 aa28.16■■■□□ 2.1
C9orf40-201ENST00000376854 FAN1Q9Y2M0 1017 aa28.16■■■□□ 2.1
C9orf40-201ENST00000376854 PVALEFA0A1B0GWK0 134 aa28.15■■■□□ 2.1
C9orf40-201ENST00000376854 IDEP14735 1019 aa28.15■■■□□ 2.1
C9orf40-201ENST00000376854 NOVP48745 357 aa28.15■■■□□ 2.1
C9orf40-201ENST00000376854 FXR2P51116 673 aaKnown RBP eCLIP28.15■■■□□ 2.1
C9orf40-201ENST00000376854 TMEM266Q2M3C6 531 aa28.15■■■□□ 2.1
C9orf40-201ENST00000376854 CAGE1Q8TC20 777 aa28.15■■■□□ 2.1
C9orf40-201ENST00000376854 SECISBP2LQ93073 1101 aaKnown RBP28.15■■■□□ 2.1
C9orf40-201ENST00000376854 POLLQ9UGP5 575 aa28.15■■■□□ 2.1
C9orf40-201ENST00000376854 hCG_1984214I3L0E3 225 aa28.15■■■□□ 2.1
C9orf40-201ENST00000376854 PDHBP11177 359 aa28.15■■■□□ 2.1
C9orf40-201ENST00000376854 IL1R1P14778 569 aa28.15■■■□□ 2.1
C9orf40-201ENST00000376854 DYMQ7RTS9 669 aa28.15■■■□□ 2.1
C9orf40-201ENST00000376854 ZNF713Q8N859 430 aaPredicted RBP28.15■■■□□ 2.1
C9orf40-201ENST00000376854 NDST4Q9H3R1 872 aa28.15■■■□□ 2.1
C9orf40-201ENST00000376854 ZNF263O14978 683 aa28.14■■■□□ 2.1
C9orf40-201ENST00000376854 SLC37A4O43826 429 aa28.14■■■□□ 2.1
C9orf40-201ENST00000376854 PLEKP08567 350 aaPredicted RBP28.14■■■□□ 2.1
C9orf40-201ENST00000376854 ATP2B4P23634 1241 aa28.14■■■□□ 2.1
C9orf40-201ENST00000376854 MUM1L1Q5H9M0 696 aa28.14■■■□□ 2.1
C9orf40-201ENST00000376854 COA7Q96BR5 231 aa28.14■■■□□ 2.1
C9orf40-201ENST00000376854 JADE2Q9NQC1 790 aa28.14■■■□□ 2.1
C9orf40-201ENST00000376854 PLAGL2Q9UPG8 496 aa28.14■■■□□ 2.1
C9orf40-201ENST00000376854 CDK5RAP2Q96SN8 1893 aa28.14■■■□□ 2.1
C9orf40-201ENST00000376854 TARSL2A2RTX5 802 aaKnown RBP28.14■■■□□ 2.09
C9orf40-201ENST00000376854 TDP2O95551 362 aa28.14■■■□□ 2.09
C9orf40-201ENST00000376854 HNRNPH3P31942 346 aaKnown RBP28.14■■■□□ 2.09
C9orf40-201ENST00000376854 ADCY7P51828 1080 aa28.14■■■□□ 2.09
C9orf40-201ENST00000376854 ZSCAN26Q16670 478 aa28.14■■■□□ 2.09
C9orf40-201ENST00000376854 CCDC96Q2M329 555 aa28.14■■■□□ 2.09
C9orf40-201ENST00000376854 MFSD14BQ5SR56 506 aa28.14■■■□□ 2.09
C9orf40-201ENST00000376854 KRT26Q7Z3Y9 468 aa28.14■■■□□ 2.09
C9orf40-201ENST00000376854 FAM71BQ8TC56 605 aa28.14■■■□□ 2.09
C9orf40-201ENST00000376854 SIK3Q9Y2K2 1263 aa28.14■■■□□ 2.09
C9orf40-201ENST00000376854 ZNF185O15231 689 aa28.13■■■□□ 2.09
C9orf40-201ENST00000376854 MAP9Q49MG5 647 aa28.13■■■□□ 2.09
C9orf40-201ENST00000376854 SEPT12Q8IYM1 358 aa28.13■■■□□ 2.09
C9orf40-201ENST00000376854 FAM207AQ9NSI2 230 aaPredicted RBP28.13■■■□□ 2.09
C9orf40-201ENST00000376854 ADRA2BP18089 450 aa28.13■■■□□ 2.09
C9orf40-201ENST00000376854 C2CD5Q86YS7 1000 aa28.13■■■□□ 2.09
C9orf40-201ENST00000376854 FAM163AQ96GL9 167 aaPredicted RBP28.13■■■□□ 2.09
C9orf40-201ENST00000376854 EPHB6O15197 1021 aa28.12■■■□□ 2.09
C9orf40-201ENST00000376854 FGFR1OPO95684 399 aaKnown RBP28.12■■■□□ 2.09
C9orf40-201ENST00000376854 SLF2Q8IX21 1173 aa28.12■■■□□ 2.09
C9orf40-201ENST00000376854 GUF1Q8N442 669 aaKnown RBP28.12■■■□□ 2.09
C9orf40-201ENST00000376854 TBC1D16Q8TBP0 767 aa28.12■■■□□ 2.09
C9orf40-201ENST00000376854 RBM17Q96I25 401 aaKnown RBP28.12■■■□□ 2.09
C9orf40-201ENST00000376854 RAB34Q9BZG1 259 aa28.12■■■□□ 2.09
C9orf40-201ENST00000376854 ARHGAP20Q9P2F6 1191 aa28.12■■■□□ 2.09
C9orf40-201ENST00000376854 POTEMA6NI47 508 aa28.12■■■□□ 2.09
C9orf40-201ENST00000376854 USO1O60763 962 aaKnown RBP28.12■■■□□ 2.09
C9orf40-201ENST00000376854 MAN2A1Q16706 1144 aa28.12■■■□□ 2.09
C9orf40-201ENST00000376854 IFIH1Q9BYX4 1025 aaKnown RBP28.12■■■□□ 2.09
C9orf40-201ENST00000376854 VIPAS39Q9H9C1 493 aa28.12■■■□□ 2.09
C9orf40-201ENST00000376854 MED4Q9NPJ6 270 aa28.12■■■□□ 2.09
C9orf40-201ENST00000376854 SPATA31A6Q5VVP1 1343 aa28.12■■■□□ 2.09
C9orf40-201ENST00000376854 PDE2AO00408 941 aaPredicted RBP28.11■■■□□ 2.09
C9orf40-201ENST00000376854 TNNT3P45378 269 aaPredicted RBP28.11■■■□□ 2.09
C9orf40-201ENST00000376854 DDR1Q08345 913 aa28.11■■■□□ 2.09
C9orf40-201ENST00000376854 MEX3CQ5U5Q3 659 aaKnown RBP28.11■■■□□ 2.09
C9orf40-201ENST00000376854 RAD54LQ92698 747 aa28.11■■■□□ 2.09
C9orf40-201ENST00000376854 MMRN2Q9H8L6 949 aa28.11■■■□□ 2.09
C9orf40-201ENST00000376854 EDIL3O43854 480 aa28.1■■■□□ 2.09
C9orf40-201ENST00000376854 LRRC47Q8N1G4 583 aaKnown RBP28.1■■■□□ 2.09
C9orf40-201ENST00000376854 TRIM58Q8NG06 486 aa28.1■■■□□ 2.09
C9orf40-201ENST00000376854 GOLGA5Q8TBA6 731 aa28.1■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms