RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 DYMQ7RTS9 669 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 GPBP1Q86WP2 473 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 DYDC2Q96IM9 177 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 PHLPP2Q6ZVD8 1323 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 SCG2P13521 617 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 SYTL2Q9HCH5 934 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 ABCC5O15440 1437 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 GOLGA8RI6L899 631 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 PGRMC1O00264 195 aaKnown RBP12.58□□□□□ -0.4
VPS13A-205ENST00000376636 ZBED4O75132 1171 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 S100A5P33763 92 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 PTK2BQ14289 1009 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 RARS2Q5T160 578 aaKnown RBP12.58□□□□□ -0.4
VPS13A-205ENST00000376636 MBD4O95243 580 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 SLC9A1P19634 815 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 PPP6R3Q5H9R7 873 aaPredicted RBP12.58□□□□□ -0.4
VPS13A-205ENST00000376636 TPH2Q8IWU9 490 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 H0YC42 278 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 PSMC1P62191 440 aaKnown RBP12.58□□□□□ -0.4
VPS13A-205ENST00000376636 KRT39Q6A163 491 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 SNX19Q92543 992 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 DISC1Q9NRI5 854 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 SNAPC4Q5SXM2 1469 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 PNOCQ13519 176 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 MPP6Q9NZW5 540 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 KIAA1468Q9P260 1216 aa12.58□□□□□ -0.4
VPS13A-205ENST00000376636 CPSF3Q9UKF6 684 aaKnown RBP12.58□□□□□ -0.4
VPS13A-205ENST00000376636 SMCO2A6NFE2 343 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 DDX5P17844 614 aaKnown RBP12.57□□□□□ -0.4
VPS13A-205ENST00000376636 TMOD1P28289 359 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 RBM17Q96I25 401 aaKnown RBP12.57□□□□□ -0.4
VPS13A-205ENST00000376636 TMEM191BP0C7N4 346 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 BLVRAP53004 296 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 CADPS2Q86UW7 1296 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 ABHD8Q96I13 439 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 DONSONQ9NYP3 566 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 EMILIN1Q9Y6C2 1016 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 ZNF500O60304 480 aaPredicted RBP12.57□□□□□ -0.4
VPS13A-205ENST00000376636 WDR47O94967 919 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 MT-ND3P03897 115 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 MMEP08473 750 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 FAM102BQ5T8I3 360 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 PPP4R4Q6NUP7 873 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 TRPV6Q9H1D0 765 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 RASSF10A6NK89 507 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 K7ENM7 598 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 ADAMTS2O95450 1211 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 FAM193BQ96PV7 902 aaPredicted RBP12.57□□□□□ -0.4
VPS13A-205ENST00000376636 ATP8B3O60423 1300 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 ATP2B4P23634 1241 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 PANK4Q9NVE7 773 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 KRT33BQ14525 404 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 RFX6Q8HWS3 928 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 STK17AQ9UEE5 414 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 WDR7Q9Y4E6 1490 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 NR1H3Q13133 447 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 USH1GQ495M9 461 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 BZW1Q7L1Q6 419 aaKnown RBP12.57□□□□□ -0.4
VPS13A-205ENST00000376636 SKAP1Q86WV1 359 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 NME9Q86XW9 330 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 DIS3L2Q8IYB7 885 aaKnown RBP12.57□□□□□ -0.4
VPS13A-205ENST00000376636 SH3GL2Q99962 352 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 NR1D1P20393 614 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 ATP8A1Q9Y2Q0 1164 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 KRT26Q7Z3Y9 468 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 DCTPP1Q9H773 170 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 KIF9Q9HAQ2 790 aa12.57□□□□□ -0.4
VPS13A-205ENST00000376636 B4E1Z4 1266 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 HSPA1AP0DMV8 641 aaKnown RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 HSPA1BP0DMV9 641 aaKnown RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 CDC25BP30305 580 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 IFRD2Q12894 506 aaPredicted RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 C8orf34Q49A92 452 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 HDDC2Q7Z4H3 204 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 FAM178BQ8IXR5 827 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 GLG1Q92896 1179 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 MKL2Q9ULH7 1088 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 KDM5AP29375 1690 aaKnown RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 WASLO00401 505 aaPredicted RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 HNRNPRO43390 633 aaKnown RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 XPOTO43592 962 aaKnown RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 ORC4O43929 436 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 CCDC15Q0P6D6 951 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 MAGOHBQ96A72 148 aaKnown RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 VPS39Q96JC1 886 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 V9GY48 417 aaPredicted RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 SRGAP2CP0DJJ0 459 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 TAF1BQ53T94 588 aaPredicted RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 LINS1Q8NG48 757 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 PARP3Q9Y6F1 533 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 TFCP2Q12800 502 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 ADALQ6DHV7 355 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 ACAD11Q709F0 780 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 COPS6Q7L5N1 327 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 NELFCDQ8IXH7 590 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 PPM1KQ8N3J5 372 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 PBKQ96KB5 322 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 KDM4CQ9H3R0 1056 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 MSH6P52701 1360 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 MMS22LQ6ZRQ5 1243 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms