RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 VCAM1P19320 739 aa17.56■□□□□ 0.4
CCDC40-202ENST00000374876 TRAPPC10P48553 1259 aa17.56■□□□□ 0.4
CCDC40-202ENST00000374876 NOM1Q5C9Z4 860 aaKnown RBP17.56■□□□□ 0.4
CCDC40-202ENST00000374876 PIK3AP1Q6ZUJ8 805 aa17.56■□□□□ 0.4
CCDC40-202ENST00000374876 VCPKMTQ9H867 229 aa17.56■□□□□ 0.4
CCDC40-202ENST00000374876 TCP11L1Q9NUJ3 509 aa17.56■□□□□ 0.4
CCDC40-202ENST00000374876 WNT7AO00755 349 aa17.55■□□□□ 0.4
CCDC40-202ENST00000374876 SLFN14P0C7P3 912 aa17.55■□□□□ 0.4
CCDC40-202ENST00000374876 CALML3P27482 149 aa17.55■□□□□ 0.4
CCDC40-202ENST00000374876 ATP2C1P98194 919 aaPredicted RBP17.55■□□□□ 0.4
CCDC40-202ENST00000374876 PTGDRQ13258 359 aa17.55■□□□□ 0.4
CCDC40-202ENST00000374876 NYAP1Q6ZVC0 841 aa17.55■□□□□ 0.4
CCDC40-202ENST00000374876 CCDC112Q8NEF3 446 aa17.55■□□□□ 0.4
CCDC40-202ENST00000374876 SPATA20Q8TB22 786 aa17.55■□□□□ 0.4
CCDC40-202ENST00000374876 MKL1Q969V6 931 aa17.55■□□□□ 0.4
CCDC40-202ENST00000374876 C12orf42Q96LP6 360 aa17.55■□□□□ 0.4
CCDC40-202ENST00000374876 SH2D4AQ9H788 454 aa17.55■□□□□ 0.4
CCDC40-202ENST00000374876 VWA3AA6NCI4 1184 aa17.55■□□□□ 0.4
CCDC40-202ENST00000374876 CA12O43570 354 aa17.55■□□□□ 0.4
CCDC40-202ENST00000374876 ENOX1Q8TC92 643 aaKnown RBP17.55■□□□□ 0.4
CCDC40-202ENST00000374876 ANKS1AQ92625 1134 aa17.55■□□□□ 0.4
CCDC40-202ENST00000374876 MTMR7Q9Y216 660 aa17.55■□□□□ 0.4
CCDC40-202ENST00000374876 NFE2L3Q9Y4A8 694 aa17.55■□□□□ 0.4
CCDC40-202ENST00000374876 A0A087X0B3 334 aa17.54■□□□□ 0.4
CCDC40-202ENST00000374876 F5H6K3 240 aa17.54■□□□□ 0.4
CCDC40-202ENST00000374876 CTIFO43310 598 aaKnown RBP17.54■□□□□ 0.4
CCDC40-202ENST00000374876 CDK11BP21127 795 aaKnown RBP17.54■□□□□ 0.4
CCDC40-202ENST00000374876 KLRC3Q07444 240 aa17.54■□□□□ 0.4
CCDC40-202ENST00000374876 VSTM4Q8IW00 320 aa17.54■□□□□ 0.4
CCDC40-202ENST00000374876 RPAP3Q9H6T3 665 aaPredicted RBP17.54■□□□□ 0.4
CCDC40-202ENST00000374876 ZFYVE28Q9HCC9 887 aa17.54■□□□□ 0.4
CCDC40-202ENST00000374876 SAGE1Q9NXZ1 904 aa17.54■□□□□ 0.4
CCDC40-202ENST00000374876 MYH4Q9Y623 1939 aa17.54■□□□□ 0.4
CCDC40-202ENST00000374876 TOP1P11387 765 aaKnown RBP17.54■□□□□ 0.4
CCDC40-202ENST00000374876 AFMP43652 599 aa17.54■□□□□ 0.4
CCDC40-202ENST00000374876 KCNJ6P48051 423 aa17.54■□□□□ 0.4
CCDC40-202ENST00000374876 GNAQP50148 359 aa17.54■□□□□ 0.4
CCDC40-202ENST00000374876 NUP88Q99567 741 aaPredicted RBP17.54■□□□□ 0.4
CCDC40-202ENST00000374876 TMEM47Q9BQJ4 181 aa17.54■□□□□ 0.4
CCDC40-202ENST00000374876 ASCC2Q9H1I8 757 aaPredicted RBP17.54■□□□□ 0.4
CCDC40-202ENST00000374876 GOPCQ9HD26 462 aa17.54■□□□□ 0.4
CCDC40-202ENST00000374876 SH3GLB2Q9NR46 395 aa17.54■□□□□ 0.4
CCDC40-202ENST00000374876 LOC285556D6RIA3 1793 aa17.53■□□□□ 0.4
CCDC40-202ENST00000374876 HOXA7P31268 230 aaPredicted RBP17.53■□□□□ 0.4
CCDC40-202ENST00000374876 NOVP48745 357 aa17.53■□□□□ 0.4
CCDC40-202ENST00000374876 GRM4Q14833 912 aa17.53■□□□□ 0.4
CCDC40-202ENST00000374876 HSP90AA4PQ58FG1 418 aa17.53■□□□□ 0.4
CCDC40-202ENST00000374876 ZNF710Q8N1W2 664 aa17.53■□□□□ 0.4
CCDC40-202ENST00000374876 PAGE5Q96GU1 130 aa17.53■□□□□ 0.4
CCDC40-202ENST00000374876 P2RX7Q99572 595 aaKnown RBP17.53■□□□□ 0.4
CCDC40-202ENST00000374876 KIF2AO00139 706 aaPredicted RBP17.52■□□□□ 0.4
CCDC40-202ENST00000374876 NDUFB10O96000 172 aa17.52■□□□□ 0.4
CCDC40-202ENST00000374876 ERCC5P28715 1186 aaPredicted RBP17.52■□□□□ 0.4
CCDC40-202ENST00000374876 MCM7P33993 719 aa17.52■□□□□ 0.4
CCDC40-202ENST00000374876 LBX1P52954 281 aa17.52■□□□□ 0.4
CCDC40-202ENST00000374876 E4F1Q66K89 784 aaPredicted RBP17.52■□□□□ 0.4
CCDC40-202ENST00000374876 SAMD1Q6SPF0 538 aaPredicted RBP17.52■□□□□ 0.4
CCDC40-202ENST00000374876 CATSPERGQ6ZRH7 1159 aa17.52■□□□□ 0.4
CCDC40-202ENST00000374876 RASGRP2Q7LDG7 609 aa17.52■□□□□ 0.4
CCDC40-202ENST00000374876 TRMT44Q8IYL2 757 aaKnown RBP17.52■□□□□ 0.4
CCDC40-202ENST00000374876 BLIDQ8IZY5 108 aa17.52■□□□□ 0.4
CCDC40-202ENST00000374876 STAG2Q8N3U4 1231 aa17.52■□□□□ 0.4
CCDC40-202ENST00000374876 ZCCHC17Q9NP64 241 aaKnown RBP17.52■□□□□ 0.4
CCDC40-202ENST00000374876 CPA4Q9UI42 421 aa17.52■□□□□ 0.4
CCDC40-202ENST00000374876 SLC45A1Q9Y2W3 748 aa17.52■□□□□ 0.4
CCDC40-202ENST00000374876 USP17L15C9J2P7 530 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 USP17L13C9JLJ4 530 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 TMEM232C9JQI7 657 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 USP17L11C9JVI0 530 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 USP17L18D6R9N7 530 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 USP17L22D6RA61 530 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 USP17L17D6RBQ6 530 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 USP17L19D6RCP7 530 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 USP17L20D6RJB6 530 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 TLR2O60603 784 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 PEX10O60683 326 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 HSPA8P11142 646 aaKnown RBP17.52■□□□□ 0.39
CCDC40-202ENST00000374876 ZNF18P17022 549 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 OSBPP22059 807 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 IRX3P78415 501 aaPredicted RBP17.52■□□□□ 0.39
CCDC40-202ENST00000374876 USP17L24Q0WX57 530 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 PABPC4Q13310 644 aaKnown RBP eCLIP17.52■□□□□ 0.39
CCDC40-202ENST00000374876 CT47A1Q5JQC4 288 aaPredicted RBP17.52■□□□□ 0.39
CCDC40-202ENST00000374876 FAM83BQ5T0W9 1011 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 SLFN13Q68D06 897 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 SH3RF1Q7Z6J0 888 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 LPAR1Q92633 364 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 GPKOWQ92917 476 aaPredicted RBP eCLIP17.52■□□□□ 0.39
CCDC40-202ENST00000374876 TANGO6Q9C0B7 1094 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 MAD2L2Q9UI95 211 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 PCDHA4Q9UN74 947 aa17.52■□□□□ 0.39
CCDC40-202ENST00000374876 ECM2O94769 699 aaPredicted RBP17.51■□□□□ 0.39
CCDC40-202ENST00000374876 PPP4R3BQ5MIZ7 849 aa17.51■□□□□ 0.39
CCDC40-202ENST00000374876 SMCR8Q8TEV9 937 aaPredicted RBP17.51■□□□□ 0.39
CCDC40-202ENST00000374876 PARK7Q99497 189 aaKnown RBP17.51■□□□□ 0.39
CCDC40-202ENST00000374876 PYM1Q9BRP8 204 aaKnown RBP17.51■□□□□ 0.39
CCDC40-202ENST00000374876 CFHR5Q9BXR6 569 aa17.51■□□□□ 0.39
CCDC40-202ENST00000374876 BAZ2BQ9UIF8 2168 aaKnown RBP17.51■□□□□ 0.39
CCDC40-202ENST00000374876 CTCFP49711 727 aaPredicted RBP17.5■□□□□ 0.39
CCDC40-202ENST00000374876 IQUBQ8NA54 791 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms