RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 NFXL1Q6ZNB6 911 aa21.33■■□□□ 1.01
CLN3-202ENST00000355477 TDHQ8IZJ6 230 aa21.33■■□□□ 1.01
CLN3-202ENST00000355477 NSUN6Q8TEA1 469 aaKnown RBP21.33■■□□□ 1.01
CLN3-202ENST00000355477 BADQ92934 168 aa21.33■■□□□ 1.01
CLN3-202ENST00000355477 TOX2Q96NM4 488 aa21.33■■□□□ 1.01
CLN3-202ENST00000355477 CCDC69A6NI79 296 aa21.32■■□□□ 1
CLN3-202ENST00000355477 B4DLN1 442 aa21.32■■□□□ 1
CLN3-202ENST00000355477 MRPL12P52815 198 aaKnown RBP21.32■■□□□ 1
CLN3-202ENST00000355477 GHRHRQ02643 423 aa21.32■■□□□ 1
CLN3-202ENST00000355477 ADCK5Q3MIX3 580 aa21.32■■□□□ 1
CLN3-202ENST00000355477 TSGA10IPQ3SY00 556 aa21.32■■□□□ 1
CLN3-202ENST00000355477 RAB11FIP4Q86YS3 637 aa21.32■■□□□ 1
CLN3-202ENST00000355477 CTCFLQ8NI51 663 aaPredicted RBP21.32■■□□□ 1
CLN3-202ENST00000355477 COPS5Q92905 334 aa21.32■■□□□ 1
CLN3-202ENST00000355477 GRIN2DO15399 1336 aa21.31■■□□□ 1
CLN3-202ENST00000355477 A0A0U1RQG5 324 aaPredicted RBP21.31■■□□□ 1
CLN3-202ENST00000355477 DCDC2CA8MYV0 355 aa21.31■■□□□ 1
CLN3-202ENST00000355477 ARVCFO00192 962 aa21.31■■□□□ 1
CLN3-202ENST00000355477 KIAA0355O15063 1070 aa21.31■■□□□ 1
CLN3-202ENST00000355477 ARIH2O95376 493 aa21.31■■□□□ 1
CLN3-202ENST00000355477 PLEKHA8P1O95397 391 aa21.31■■□□□ 1
CLN3-202ENST00000355477 EIF2AK2P19525 551 aaKnown RBP21.31■■□□□ 1
CLN3-202ENST00000355477 HOXA13P31271 388 aaPredicted RBP21.31■■□□□ 1
CLN3-202ENST00000355477 ARHGEF16Q5VV41 709 aa21.31■■□□□ 1
CLN3-202ENST00000355477 CMTR1Q8N1G2 835 aaKnown RBP21.31■■□□□ 1
CLN3-202ENST00000355477 SCFD2Q8WU76 684 aa21.31■■□□□ 1
CLN3-202ENST00000355477 LRCH3Q96II8 777 aa21.31■■□□□ 1
CLN3-202ENST00000355477 NEK1Q96PY6 1258 aa21.31■■□□□ 1
CLN3-202ENST00000355477 IWS1Q96ST2 819 aa21.31■■□□□ 1
CLN3-202ENST00000355477 SPZ1Q9BXG8 430 aa21.31■■□□□ 1
CLN3-202ENST00000355477 PXMP2Q9NR77 195 aa21.31■■□□□ 1
CLN3-202ENST00000355477 KIF5BP33176 963 aa21.3■■□□□ 1
CLN3-202ENST00000355477 EXOSC10Q01780 885 aaKnown RBP21.3■■□□□ 1
CLN3-202ENST00000355477 PPP2R5BQ15173 497 aa21.3■■□□□ 1
CLN3-202ENST00000355477 CCDC62Q6P9F0 684 aa21.3■■□□□ 1
CLN3-202ENST00000355477 SRBD1Q8N5C6 995 aaKnown RBP21.3■■□□□ 1
CLN3-202ENST00000355477 OR6J1Q8NGC5 347 aa21.3■■□□□ 1
CLN3-202ENST00000355477 TCEANC2Q96MN5 208 aa21.3■■□□□ 1
CLN3-202ENST00000355477 TMEM39AQ9NV64 488 aa21.3■■□□□ 1
CLN3-202ENST00000355477 ZEB2O60315 1214 aa21.29■■□□□ 1
CLN3-202ENST00000355477 CABYRO75952 493 aa21.29■■□□□ 1
CLN3-202ENST00000355477 NR3C2P08235 984 aa21.29■■□□□ 1
CLN3-202ENST00000355477 TXNP10599 105 aaKnown RBP21.29■■□□□ 1
CLN3-202ENST00000355477 SMARCA1P28370 1054 aa21.29■■□□□ 1
CLN3-202ENST00000355477 PSMC6P62333 389 aa21.29■■□□□ 1
CLN3-202ENST00000355477 STXBP2Q15833 593 aa21.29■■□□□ 1
CLN3-202ENST00000355477 SEPT14Q6ZU15 432 aa21.29■■□□□ 1
CLN3-202ENST00000355477 SGMS1Q86VZ5 419 aa21.29■■□□□ 1
CLN3-202ENST00000355477 SLC43A3Q8NBI5 491 aa21.29■■□□□ 1
CLN3-202ENST00000355477 MAP3K20Q9NYL2 800 aaKnown RBP21.29■■□□□ 1
CLN3-202ENST00000355477 SLC12A7Q9Y666 1083 aa21.29■■□□□ 1
CLN3-202ENST00000355477 SCN10AQ9Y5Y9 1956 aa21.28■■□□□ 1
CLN3-202ENST00000355477 NKRFO15226 690 aaKnown RBP eCLIP21.28■■□□□ 1
CLN3-202ENST00000355477 TRAF1Q13077 416 aa21.28■■□□□ 1
CLN3-202ENST00000355477 ITGA7Q13683 1181 aa21.28■■□□□ 1
CLN3-202ENST00000355477 TTLL4Q14679 1199 aa21.28■■□□□ 1
CLN3-202ENST00000355477 LRIT3Q3SXY7 679 aa21.28■■□□□ 1
CLN3-202ENST00000355477 DHX32Q7L7V1 743 aaKnown RBP21.28■■□□□ 1
CLN3-202ENST00000355477 FAM126BQ8IXS8 530 aa21.28■■□□□ 1
CLN3-202ENST00000355477 KCNB2Q92953 911 aa21.28■■□□□ 1
CLN3-202ENST00000355477 LZTS2Q9BRK4 669 aa21.28■■□□□ 1
CLN3-202ENST00000355477 MROH7Q68CQ1 1323 aa21.28■■□□□ 1
CLN3-202ENST00000355477 GCOM1H8Y6P7 765 aaPredicted RBP21.27■■□□□ 1
CLN3-202ENST00000355477 EIF3JO75822 258 aaKnown RBP21.27■■□□□ 1
CLN3-202ENST00000355477 POLR2MP0CAP2 368 aa21.27■■□□□ 1
CLN3-202ENST00000355477 CALM1P0DP23 149 aa21.27■■□□□ 1
CLN3-202ENST00000355477 CALM2P0DP24 149 aa21.27■■□□□ 1
CLN3-202ENST00000355477 CALM3P0DP25 149 aa21.27■■□□□ 1
CLN3-202ENST00000355477 RAG1P15918 1043 aa21.27■■□□□ 1
CLN3-202ENST00000355477 GNAQP50148 359 aa21.27■■□□□ 1
CLN3-202ENST00000355477 LY6KQ17RY6 165 aa21.27■■□□□ 1
CLN3-202ENST00000355477 SAMD3Q8N6K7 520 aa21.27■■□□□ 1
CLN3-202ENST00000355477 FANCBQ8NB91 859 aa21.27■■□□□ 1
CLN3-202ENST00000355477 RRP36Q96EU6 259 aaKnown RBP21.27■■□□□ 1
CLN3-202ENST00000355477 PDCD2LQ9BRP1 358 aa21.27■■□□□ 1
CLN3-202ENST00000355477 TBX21Q9UL17 535 aa21.27■■□□□ 1
CLN3-202ENST00000355477 CD4P01730 458 aa21.26■□□□□ 0.99
CLN3-202ENST00000355477 MYL3P08590 195 aa21.26■□□□□ 0.99
CLN3-202ENST00000355477 CPT1AP50416 773 aa21.26■□□□□ 0.99
CLN3-202ENST00000355477 PURAQ00577 322 aaKnown RBP21.26■□□□□ 0.99
CLN3-202ENST00000355477 C9orf50Q5SZB4 431 aa21.26■□□□□ 0.99
CLN3-202ENST00000355477 FCHSD1Q86WN1 690 aa21.26■□□□□ 0.99
CLN3-202ENST00000355477 IL31RAQ8NI17 732 aa21.26■□□□□ 0.99
CLN3-202ENST00000355477 POLR3EQ9NVU0 708 aa21.26■□□□□ 0.99
CLN3-202ENST00000355477 PPP4R2Q9NY27 417 aa21.26■□□□□ 0.99
CLN3-202ENST00000355477 BRPF3Q9ULD4 1205 aa21.26■□□□□ 0.99
CLN3-202ENST00000355477 hCG_1642624A0A1W2PR95 340 aa21.25■□□□□ 0.99
CLN3-202ENST00000355477 A6NJR5 290 aa21.25■□□□□ 0.99
CLN3-202ENST00000355477 RGS20O76081 388 aa21.25■□□□□ 0.99
CLN3-202ENST00000355477 MYCLP12524 364 aaPredicted RBP21.25■□□□□ 0.99
CLN3-202ENST00000355477 CPA1P15085 419 aa21.25■□□□□ 0.99
CLN3-202ENST00000355477 HSPA4P34932 840 aa21.25■□□□□ 0.99
CLN3-202ENST00000355477 EPHB4P54760 987 aa21.25■□□□□ 0.99
CLN3-202ENST00000355477 KRT32Q14532 448 aa21.25■□□□□ 0.99
CLN3-202ENST00000355477 PGM5Q15124 567 aa21.25■□□□□ 0.99
CLN3-202ENST00000355477 SHHQ15465 462 aa21.25■□□□□ 0.99
CLN3-202ENST00000355477 APOA5Q6Q788 366 aa21.25■□□□□ 0.99
CLN3-202ENST00000355477 VSIG10LQ86VR7 867 aa21.25■□□□□ 0.99
CLN3-202ENST00000355477 MICU3Q86XE3 530 aa21.25■□□□□ 0.99
CLN3-202ENST00000355477 CCDC82Q8N4S0 544 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms