RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 FAM193AP78312 1265 aa24.7■■□□□ 1.55
UPF3A-201ENST00000351487 ZBED6P86452 979 aa24.7■■□□□ 1.55
UPF3A-201ENST00000351487 AMPD2Q01433 879 aa24.7■■□□□ 1.55
UPF3A-201ENST00000351487 IQCDQ96DY2 449 aa24.7■■□□□ 1.55
UPF3A-201ENST00000351487 CDK5RAP3Q96JB5 506 aa24.7■■□□□ 1.55
UPF3A-201ENST00000351487 ARFGAP3Q9NP61 516 aa24.7■■□□□ 1.55
UPF3A-201ENST00000351487 A0A1W2PQJ5 194 aa24.7■■□□□ 1.54
UPF3A-201ENST00000351487 POTEB2H3BUK9 544 aa24.7■■□□□ 1.54
UPF3A-201ENST00000351487 MCM6Q14566 821 aa24.7■■□□□ 1.54
UPF3A-201ENST00000351487 BRD3Q15059 726 aa24.7■■□□□ 1.54
UPF3A-201ENST00000351487 TMEM119Q4V9L6 283 aa24.7■■□□□ 1.54
UPF3A-201ENST00000351487 RAD54LQ92698 747 aa24.7■■□□□ 1.54
UPF3A-201ENST00000351487 NOC4LQ9BVI4 516 aaKnown RBP24.7■■□□□ 1.54
UPF3A-201ENST00000351487 SIPA1L1O43166 1804 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 ABCB11O95342 1321 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 POTEMA6NI47 508 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 HERVK_113P62684 666 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 CDC42EP5Q6NZY7 148 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 GUF1Q8N442 669 aaKnown RBP24.69■■□□□ 1.54
UPF3A-201ENST00000351487 MSANTD4Q8NCY6 345 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 EHD4Q9H223 541 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 AGPAT5Q9NUQ2 364 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 PUF60Q9UHX1 559 aaKnown RBP24.69■■□□□ 1.54
UPF3A-201ENST00000351487 COL11A2P13942 1736 aaPredicted RBP24.69■■□□□ 1.54
UPF3A-201ENST00000351487 PSMD14O00487 310 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 TNNI2P48788 182 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 KRT83P78385 493 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 CDK17Q00537 523 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 FOXR2Q6PJQ5 311 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 CUL5Q93034 780 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 UBXN6Q9BZV1 441 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 LRRC27Q9C0I9 530 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 SLC39A2Q9NP94 309 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 ST7Q9NRC1 585 aa24.69■■□□□ 1.54
UPF3A-201ENST00000351487 BRWD3Q6RI45 1802 aa24.68■■□□□ 1.54
UPF3A-201ENST00000351487 HLA-DOAP06340 250 aa24.68■■□□□ 1.54
UPF3A-201ENST00000351487 EHHADHQ08426 723 aa24.68■■□□□ 1.54
UPF3A-201ENST00000351487 KRT79Q5XKE5 535 aa24.68■■□□□ 1.54
UPF3A-201ENST00000351487 CCDC170Q8IYT3 715 aa24.68■■□□□ 1.54
UPF3A-201ENST00000351487 SNX29Q8TEQ0 813 aa24.68■■□□□ 1.54
UPF3A-201ENST00000351487 HPS3Q969F9 1004 aa24.68■■□□□ 1.54
UPF3A-201ENST00000351487 EEF2KMTQ96G04 330 aa24.68■■□□□ 1.54
UPF3A-201ENST00000351487 ZSWIM4Q9H7M6 989 aa24.68■■□□□ 1.54
UPF3A-201ENST00000351487 ANKZF1Q9H8Y5 726 aa24.68■■□□□ 1.54
UPF3A-201ENST00000351487 ZBTB5O15062 677 aa24.67■■□□□ 1.54
UPF3A-201ENST00000351487 SASH3O75995 380 aa24.67■■□□□ 1.54
UPF3A-201ENST00000351487 NPR1P16066 1061 aa24.67■■□□□ 1.54
UPF3A-201ENST00000351487 GCFC2P16383 781 aaKnown RBP24.67■■□□□ 1.54
UPF3A-201ENST00000351487 CYLC1P35663 651 aaPredicted RBP24.67■■□□□ 1.54
UPF3A-201ENST00000351487 APOBEC3HQ6NTF7 200 aaKnown RBP24.67■■□□□ 1.54
UPF3A-201ENST00000351487 RAB21Q9UL25 225 aa24.67■■□□□ 1.54
UPF3A-201ENST00000351487 MRPL12P52815 198 aaKnown RBP24.67■■□□□ 1.54
UPF3A-201ENST00000351487 FKBP15Q5T1M5 1219 aa24.67■■□□□ 1.54
UPF3A-201ENST00000351487 TTBK2Q6IQ55 1244 aa24.67■■□□□ 1.54
UPF3A-201ENST00000351487 TEKT1Q969V4 418 aa24.67■■□□□ 1.54
UPF3A-201ENST00000351487 ZNHIT6Q9NWK9 470 aaKnown RBP24.67■■□□□ 1.54
UPF3A-201ENST00000351487 HMGB2P26583 209 aaKnown RBP24.66■■□□□ 1.54
UPF3A-201ENST00000351487 KLK7P49862 253 aa24.66■■□□□ 1.54
UPF3A-201ENST00000351487 LRRC63Q05C16 580 aa24.66■■□□□ 1.54
UPF3A-201ENST00000351487 UBE2SQ16763 222 aa24.66■■□□□ 1.54
UPF3A-201ENST00000351487 HNRNPLLQ8WVV9 542 aaKnown RBP24.66■■□□□ 1.54
UPF3A-201ENST00000351487 CCDC17Q96LX7 622 aa24.66■■□□□ 1.54
UPF3A-201ENST00000351487 NUDT12Q9BQG2 462 aa24.66■■□□□ 1.54
UPF3A-201ENST00000351487 TRIM10Q9UDY6 481 aa24.66■■□□□ 1.54
UPF3A-201ENST00000351487 DDX25Q9UHL0 483 aaKnown RBP24.66■■□□□ 1.54
UPF3A-201ENST00000351487 MYO6Q9UM54 1294 aa24.66■■□□□ 1.54
UPF3A-201ENST00000351487 GUCA1BQ9UMX6 200 aa24.66■■□□□ 1.54
UPF3A-201ENST00000351487 EIF3CLB5ME19 914 aaKnown RBP24.66■■□□□ 1.54
UPF3A-201ENST00000351487 SCNN1DP51172 638 aa24.66■■□□□ 1.54
UPF3A-201ENST00000351487 PSMD2Q13200 908 aa24.66■■□□□ 1.54
UPF3A-201ENST00000351487 EIF3CQ99613 913 aaKnown RBP24.66■■□□□ 1.54
UPF3A-201ENST00000351487 MXD3Q9BW11 206 aa24.66■■□□□ 1.54
UPF3A-201ENST00000351487 FGFR1OPO95684 399 aaKnown RBP24.65■■□□□ 1.54
UPF3A-201ENST00000351487 CCDC96Q2M329 555 aa24.65■■□□□ 1.54
UPF3A-201ENST00000351487 EHBP1Q8NDI1 1231 aa24.65■■□□□ 1.54
UPF3A-201ENST00000351487 HAS1Q92839 578 aa24.65■■□□□ 1.54
UPF3A-201ENST00000351487 FUT8Q9BYC5 575 aa24.65■■□□□ 1.54
UPF3A-201ENST00000351487 CTAGE15A4D2H0 777 aa24.65■■□□□ 1.54
UPF3A-201ENST00000351487 CTAGE8P0CG41 777 aa24.65■■□□□ 1.54
UPF3A-201ENST00000351487 DYMQ7RTS9 669 aa24.65■■□□□ 1.54
UPF3A-201ENST00000351487 TRAPPC11Q7Z392 1133 aa24.65■■□□□ 1.54
UPF3A-201ENST00000351487 KCNK18Q7Z418 384 aa24.65■■□□□ 1.54
UPF3A-201ENST00000351487 CTAGE6Q86UF2 777 aa24.65■■□□□ 1.54
UPF3A-201ENST00000351487 CTAGE4Q8IX94 777 aa24.65■■□□□ 1.54
UPF3A-201ENST00000351487 NAP1L4Q99733 375 aaKnown RBP24.65■■□□□ 1.54
UPF3A-201ENST00000351487 ATF5Q9Y2D1 282 aaPredicted RBP24.65■■□□□ 1.54
UPF3A-201ENST00000351487 HNRNPH3P31942 346 aaKnown RBP24.64■■□□□ 1.54
UPF3A-201ENST00000351487 SEPT2Q15019 361 aa24.64■■□□□ 1.54
UPF3A-201ENST00000351487 VWA3BQ502W6 1294 aa24.64■■□□□ 1.54
UPF3A-201ENST00000351487 HYIQ5T013 277 aa24.64■■□□□ 1.54
UPF3A-201ENST00000351487 CCDC122Q5T0U0 273 aa24.64■■□□□ 1.54
UPF3A-201ENST00000351487 DDX12PQ92771 950 aa24.64■■□□□ 1.54
UPF3A-201ENST00000351487 NHEJ1Q9H9Q4 299 aaPredicted RBP24.64■■□□□ 1.54
UPF3A-201ENST00000351487 USP17L10C9JJH3 530 aa24.63■■□□□ 1.53
UPF3A-201ENST00000351487 NKRFO15226 690 aaKnown RBP eCLIP24.63■■□□□ 1.53
UPF3A-201ENST00000351487 ALDH1B1P30837 517 aa24.63■■□□□ 1.53
UPF3A-201ENST00000351487 MAN2A1Q16706 1144 aa24.63■■□□□ 1.53
UPF3A-201ENST00000351487 DOK7Q18PE1 504 aa24.63■■□□□ 1.53
UPF3A-201ENST00000351487 GLT8D2Q9H1C3 349 aa24.63■■□□□ 1.53
UPF3A-201ENST00000351487 PSTPIP2Q9H939 334 aa24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms