RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ZSCAN29Q8IWY8 852 aaPredicted RBP7.52□□□□□ -1.21
VPS39-202ENST00000348544 DHX37Q8IY37 1157 aaKnown RBP7.52□□□□□ -1.21
VPS39-202ENST00000348544 GIMAP8Q8ND71 665 aaPredicted RBP7.52□□□□□ -1.21
VPS39-202ENST00000348544 LPIN2Q92539 896 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 ALS2CR12Q96Q35 445 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 ATP6V0A4Q9HBG4 840 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 CNOT8Q9UFF9 292 aaKnown RBP7.52□□□□□ -1.21
VPS39-202ENST00000348544 NFS1Q9Y697 457 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 GOLGA6L7A0A1B0GV03 622 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 PSMA7O14818 248 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 PJA2O43164 708 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 PPP1R12BO60237 982 aaPredicted RBP7.52□□□□□ -1.21
VPS39-202ENST00000348544 MGRN1O60291 552 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 RHOBTB3O94955 611 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 SLC1A4P43007 532 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 ZC3H6P61129 1189 aaKnown RBP7.52□□□□□ -1.21
VPS39-202ENST00000348544 XRCC4Q13426 336 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 KCNB1Q14721 858 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 ANKRD40Q6AI12 368 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 LDHAL6AQ6ZMR3 332 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 TMTC2Q8N394 836 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 ENAHQ8N8S7 591 aaPredicted RBP7.52□□□□□ -1.21
VPS39-202ENST00000348544 SEC16BQ96JE7 1060 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 ORAI2Q96SN7 254 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 KRT12Q99456 494 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 DISC1Q9NRI5 854 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 SIK3Q9Y2K2 1263 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 ANKRD18BA2A2Z9 1011 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 C5orf60A6NFR6 353 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 RAD51CO43502 376 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 ATP2C2O75185 946 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 SKAP2O75563 359 aaPredicted RBP7.51□□□□□ -1.21
VPS39-202ENST00000348544 RPSAP08865 295 aaKnown RBP7.51□□□□□ -1.21
VPS39-202ENST00000348544 DNA2P51530 1060 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 CCNHP51946 323 aaPredicted RBP7.51□□□□□ -1.21
VPS39-202ENST00000348544 KCTD19Q17RG1 926 aaPredicted RBP7.51□□□□□ -1.21
VPS39-202ENST00000348544 CFAP221Q4G0U5 840 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 LACTB2Q53H82 288 aaPredicted RBP7.51□□□□□ -1.21
VPS39-202ENST00000348544 RASSF8Q8NHQ8 419 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 WHAMMQ8TF30 809 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 PLIN2Q99541 437 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 PYM1Q9BRP8 204 aaKnown RBP7.51□□□□□ -1.21
VPS39-202ENST00000348544 NOC4LQ9BVI4 516 aaKnown RBP7.51□□□□□ -1.21
VPS39-202ENST00000348544 GREM2Q9H772 168 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 LRRC4CQ9HCJ2 640 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 PLCB1Q9NQ66 1216 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 FAM207AQ9NSI2 230 aaPredicted RBP7.51□□□□□ -1.21
VPS39-202ENST00000348544 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.51□□□□□ -1.216e-7■■■□□ 18.5
VPS39-202ENST00000348544 BCORQ6W2J9 1755 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 DOCK2Q92608 1830 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 LRRC53A6NM62 1247 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 DCDC2CA8MYV0 355 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 MYBP10242 640 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 EZRP15311 586 aaKnown RBP7.51□□□□□ -1.21
VPS39-202ENST00000348544 ITGA6P23229 1130 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 HSD17B3P37058 310 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 MAGEA1P43355 309 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 MTIF2P46199 727 aaKnown RBP7.51□□□□□ -1.21
VPS39-202ENST00000348544 INHBEP58166 350 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 RASSF7Q02833 373 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 GFPT1Q06210 699 aaPredicted RBP7.51□□□□□ -1.21
VPS39-202ENST00000348544 ZNF844Q08AG5 666 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 ASTE1Q2TB18 679 aaPredicted RBP7.51□□□□□ -1.21
VPS39-202ENST00000348544 C11orf91Q3C1V1 193 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 CHADLQ6NUI6 762 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 CCDC50Q8IVM0 306 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 C3orf20Q8ND61 904 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 NOC3LQ8WTT2 800 aaKnown RBP7.51□□□□□ -1.21
VPS39-202ENST00000348544 CCT6BQ92526 530 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 RAPGEF5Q92565 580 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 P2RX5Q93086 422 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 INPP4AQ96PE3 977 aaPredicted RBP7.51□□□□□ -1.21
VPS39-202ENST00000348544 MTA3Q9BTC8 594 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 PLA2G12BQ9BX93 195 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 TRIM6Q9C030 488 aaPredicted RBP7.51□□□□□ -1.21
VPS39-202ENST00000348544 DNAJC5Q9H3Z4 198 aa7.51□□□□□ -1.21
VPS39-202ENST00000348544 BAZ2BQ9UIF8 2168 aaKnown RBP7.5□□□□□ -1.21
VPS39-202ENST00000348544 RTL9Q8NET4 1388 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 CNTNAP5Q8WYK1 1306 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 AKR1B10O60218 316 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 FTCDO95954 541 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 CCNE1P24864 410 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 LONP1P36776 959 aaKnown RBP7.5□□□□□ -1.21
VPS39-202ENST00000348544 RNASE9P60153 205 aaKnown RBP7.5□□□□□ -1.21
VPS39-202ENST00000348544 ERVK-9P63128 1117 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 ELF3P78545 371 aaPredicted RBP7.5□□□□□ -1.21
VPS39-202ENST00000348544 STK4Q13043 487 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 RASGRF1Q13972 1273 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 CYB5RLQ6IPT4 315 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 CCDC155Q8N6L0 562 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 BAP1Q92560 729 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 TATDN2Q93075 761 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 DHTKD1Q96HY7 919 aaPredicted RBP7.5□□□□□ -1.21
VPS39-202ENST00000348544 NEUROG2Q9H2A3 272 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 KBTBD4Q9NVX7 518 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 PACSIN2Q9UNF0 486 aaPredicted RBP7.5□□□□□ -1.21
VPS39-202ENST00000348544 FAM205AQ6ZU69 1335 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 A0A1B0GUA9 196 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 PHF20L1A8MW92 1017 aa7.5□□□□□ -1.21
VPS39-202ENST00000348544 F8W031 263 aaPredicted RBP7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms