RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SLC35F6Q8N357 371 aa21.64■■□□□ 1.05
COL9A3-201ENST00000343916 OR8K1Q8NGG5 319 aa21.64■■□□□ 1.05
COL9A3-201ENST00000343916 CUL5Q93034 780 aa21.64■■□□□ 1.05
COL9A3-201ENST00000343916 AKT1S1Q96B36 256 aa21.64■■□□□ 1.05
COL9A3-201ENST00000343916 SEMA6BQ9H3T3 888 aa21.64■■□□□ 1.05
COL9A3-201ENST00000343916 COL11A2P13942 1736 aaPredicted RBP21.64■■□□□ 1.05
COL9A3-201ENST00000343916 MYO3BQ8WXR4 1341 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 APBA3O96018 575 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 ECM1Q16610 540 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 PSTPIP2Q9H939 334 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 DDX25Q9UHL0 483 aaKnown RBP21.63■■□□□ 1.05
COL9A3-201ENST00000343916 USP17L15C9J2P7 530 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 USP17L13C9JLJ4 530 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 USP17L11C9JVI0 530 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 USP17L18D6R9N7 530 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 USP17L22D6RA61 530 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 USP17L17D6RBQ6 530 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 USP17L19D6RCP7 530 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 USP17L20D6RJB6 530 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 ARHGAP25P42331 645 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 DNM2P50570 870 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 USP17L24Q0WX57 530 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 USP17L6PQ6QN14 398 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 ZSCAN29Q8IWY8 852 aaPredicted RBP21.63■■□□□ 1.05
COL9A3-201ENST00000343916 HAS1Q92839 578 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 TRIM10Q9UDY6 481 aa21.63■■□□□ 1.05
COL9A3-201ENST00000343916 REXO2Q9Y3B8 237 aaKnown RBP21.63■■□□□ 1.05
COL9A3-201ENST00000343916 PLSCR1O15162 318 aa21.62■■□□□ 1.05
COL9A3-201ENST00000343916 IDEP14735 1019 aa21.62■■□□□ 1.05
COL9A3-201ENST00000343916 TRIM21P19474 475 aaKnown RBP21.62■■□□□ 1.05
COL9A3-201ENST00000343916 MTIF2P46199 727 aaKnown RBP21.62■■□□□ 1.05
COL9A3-201ENST00000343916 TBC1D8BQ0IIM8 1120 aa21.62■■□□□ 1.05
COL9A3-201ENST00000343916 WDR59Q6PJI9 974 aa21.62■■□□□ 1.05
COL9A3-201ENST00000343916 NOC3LQ8WTT2 800 aaKnown RBP21.62■■□□□ 1.05
COL9A3-201ENST00000343916 DNAJC7Q99615 494 aa21.62■■□□□ 1.05
COL9A3-201ENST00000343916 CAPN11Q9UMQ6 739 aa21.62■■□□□ 1.05
COL9A3-201ENST00000343916 TFR2Q9UP52 801 aa21.62■■□□□ 1.05
COL9A3-201ENST00000343916 EPN1Q9Y6I3 576 aaPredicted RBP21.62■■□□□ 1.05
COL9A3-201ENST00000343916 NRXN2Q9P2S2 1712 aa21.62■■□□□ 1.05
COL9A3-201ENST00000343916 RASSF10A6NK89 507 aa21.62■■□□□ 1.05
COL9A3-201ENST00000343916 NDUFA10O95299 355 aa21.62■■□□□ 1.05
COL9A3-201ENST00000343916 EEF2P13639 858 aaKnown RBP21.62■■□□□ 1.05
COL9A3-201ENST00000343916 MIIPQ5JXC2 388 aa21.62■■□□□ 1.05
COL9A3-201ENST00000343916 KRT79Q5XKE5 535 aa21.62■■□□□ 1.05
COL9A3-201ENST00000343916 PODNQ7Z5L7 613 aa21.62■■□□□ 1.05
COL9A3-201ENST00000343916 ZDHHC15Q96MV8 337 aa21.62■■□□□ 1.05
COL9A3-201ENST00000343916 NOC4LQ9BVI4 516 aaKnown RBP21.62■■□□□ 1.05
COL9A3-201ENST00000343916 STK17AQ9UEE5 414 aa21.62■■□□□ 1.05
COL9A3-201ENST00000343916 MYH7BA7E2Y1 1941 aa21.61■■□□□ 1.05
COL9A3-201ENST00000343916 ERCC3P19447 782 aa21.61■■□□□ 1.05
COL9A3-201ENST00000343916 PPP4R3AQ6IN85 833 aa21.61■■□□□ 1.05
COL9A3-201ENST00000343916 PPP1R18Q6NYC8 613 aa21.61■■□□□ 1.05
COL9A3-201ENST00000343916 RSRC2Q7L4I2 434 aaKnown RBP21.61■■□□□ 1.05
COL9A3-201ENST00000343916 GLIS3Q8NEA6 775 aa21.61■■□□□ 1.05
COL9A3-201ENST00000343916 RAD54LQ92698 747 aa21.61■■□□□ 1.05
COL9A3-201ENST00000343916 RAB34Q9BZG1 259 aa21.61■■□□□ 1.05
COL9A3-201ENST00000343916 PUF60Q9UHX1 559 aaKnown RBP21.61■■□□□ 1.05
COL9A3-201ENST00000343916 MRPL12P52815 198 aaKnown RBP21.61■■□□□ 1.05
COL9A3-201ENST00000343916 PDIA5Q14554 519 aa21.61■■□□□ 1.05
COL9A3-201ENST00000343916 KIF4BQ2VIQ3 1234 aa21.61■■□□□ 1.05
COL9A3-201ENST00000343916 SH3BP5LQ7L8J4 393 aa21.61■■□□□ 1.05
COL9A3-201ENST00000343916 DDX12PQ92771 950 aa21.61■■□□□ 1.05
COL9A3-201ENST00000343916 FAM198AQ9UFP1 575 aa21.61■■□□□ 1.05
COL9A3-201ENST00000343916 SEC31AO94979 1220 aaKnown RBP21.6■■□□□ 1.05
COL9A3-201ENST00000343916 SLC1A4P43007 532 aa21.6■■□□□ 1.05
COL9A3-201ENST00000343916 QRICH1Q2TAL8 776 aa21.6■■□□□ 1.05
COL9A3-201ENST00000343916 POTEAQ6S8J7 498 aa21.6■■□□□ 1.05
COL9A3-201ENST00000343916 UNC13DQ70J99 1090 aa21.6■■□□□ 1.05
COL9A3-201ENST00000343916 MTMR8Q96EF0 704 aa21.6■■□□□ 1.05
COL9A3-201ENST00000343916 TTYH3Q9C0H2 523 aa21.6■■□□□ 1.05
COL9A3-201ENST00000343916 EHD4Q9H223 541 aa21.6■■□□□ 1.05
COL9A3-201ENST00000343916 ST7Q9NRC1 585 aa21.6■■□□□ 1.05
COL9A3-201ENST00000343916 FHOD1Q9Y613 1164 aa21.6■■□□□ 1.05
COL9A3-201ENST00000343916 MARCH6O60337 910 aa21.6■■□□□ 1.05
COL9A3-201ENST00000343916 CERKLQ49MI3 558 aaPredicted RBP21.6■■□□□ 1.05
COL9A3-201ENST00000343916 PCMTD1Q96MG8 357 aaPredicted RBP21.6■■□□□ 1.05
COL9A3-201ENST00000343916 GUCA1BQ9UMX6 200 aa21.6■■□□□ 1.05
COL9A3-201ENST00000343916 GREB1LQ9C091 1923 aaPredicted RBP21.59■■□□□ 1.05
COL9A3-201ENST00000343916 SCN9AQ15858 1988 aa21.59■■□□□ 1.05
COL9A3-201ENST00000343916 CTAGE9A4FU28 777 aa21.59■■□□□ 1.05
COL9A3-201ENST00000343916 SNAP25P60880 206 aa21.59■■□□□ 1.05
COL9A3-201ENST00000343916 LRRC41Q15345 812 aa21.59■■□□□ 1.05
COL9A3-201ENST00000343916 CENPPQ6IPU0 288 aa21.59■■□□□ 1.05
COL9A3-201ENST00000343916 CCDC17Q96LX7 622 aa21.59■■□□□ 1.05
COL9A3-201ENST00000343916 ARGLU1Q9NWB6 273 aaPredicted RBP21.59■■□□□ 1.05
COL9A3-201ENST00000343916 FAM53CQ9NYF3 392 aa21.59■■□□□ 1.05
COL9A3-201ENST00000343916 ECE2O60344 883 aa21.58■■□□□ 1.05
COL9A3-201ENST00000343916 SEPT2Q15019 361 aa21.58■■□□□ 1.05
COL9A3-201ENST00000343916 FAM114A1Q8IWE2 563 aa21.58■■□□□ 1.05
COL9A3-201ENST00000343916 PCDHA12Q9UN75 941 aa21.58■■□□□ 1.05
COL9A3-201ENST00000343916 PCDHA1Q9Y5I3 950 aa21.58■■□□□ 1.05
COL9A3-201ENST00000343916 GDF11O95390 407 aa21.58■■□□□ 1.05
COL9A3-201ENST00000343916 TSR1Q2NL82 804 aaKnown RBP21.58■■□□□ 1.05
COL9A3-201ENST00000343916 TMCO3Q6UWJ1 677 aa21.58■■□□□ 1.05
COL9A3-201ENST00000343916 C2CD5Q86YS7 1000 aa21.58■■□□□ 1.05
COL9A3-201ENST00000343916 CDC23Q9UJX2 597 aa21.58■■□□□ 1.05
COL9A3-201ENST00000343916 PVALEFA0A1B0GWK0 134 aa21.57■■□□□ 1.04
COL9A3-201ENST00000343916 CHMP4BP1P59074 171 aa21.57■■□□□ 1.04
COL9A3-201ENST00000343916 TERF2Q15554 542 aa21.57■■□□□ 1.04
COL9A3-201ENST00000343916 TMEM119Q4V9L6 283 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms