RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 YIPF3Q9GZM5 350 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 NSRP1Q9H0G5 558 aaKnown RBP8.99□□□□□ -0.97
ATG4A-201ENST00000343524 CCDC8Q9H0W5 538 aaPredicted RBP8.99□□□□□ -0.97
ATG4A-201ENST00000343524 PPANQ9NQ55 473 aaKnown RBP8.99□□□□□ -0.97
ATG4A-201ENST00000343524 ANAPC4Q9UJX5 808 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 SLC12A4Q9UP95 1085 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 LUC7L2Q9Y383 392 aaKnown RBP8.99□□□□□ -0.97
ATG4A-201ENST00000343524 UTYO14607 1347 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 IGSF1Q8N6C5 1336 aa8.99□□□□□ -0.97
ATG4A-201ENST00000343524 KLF18A0A0U1RQI7 1052 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 ZNF233A6NK53 670 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 PPIP5K2O43314 1243 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 SRGAP2O75044 1071 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 NPTXRO95502 500 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 KRT14P02533 472 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 COPB1P53618 953 aaKnown RBP8.98□□□□□ -0.97
ATG4A-201ENST00000343524 SEC24CP53992 1094 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 HERVK_113P62684 666 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 CUL3Q13618 768 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 ZNF268Q14587 947 aaPredicted RBP8.98□□□□□ -0.97
ATG4A-201ENST00000343524 TBC1D25Q3MII6 688 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 ACCSLQ4AC99 568 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 HAUS3Q68CZ6 603 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 CPLX4Q7Z7G2 160 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 ANKRD23Q86SG2 305 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 GBP7Q8N8V2 638 aaPredicted RBP8.98□□□□□ -0.97
ATG4A-201ENST00000343524 KBTBD3Q8NAB2 608 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 B4GALNT2Q8NHY0 566 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 FAM81AQ8TBF8 368 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 NECTIN2Q92692 538 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 EZH1Q92800 747 aaPredicted RBP8.98□□□□□ -0.97
ATG4A-201ENST00000343524 LRRC45Q96CN5 670 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 ALG1Q9BT22 464 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 PHAXQ9H814 394 aaKnown RBP8.98□□□□□ -0.97
ATG4A-201ENST00000343524 TMBIM4Q9HC24 238 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 PLCB1Q9NQ66 1216 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 GDF3Q9NR23 364 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 CTNNAL1Q9UBT7 734 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 LEMD3Q9Y2U8 911 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 REXO2Q9Y3B8 237 aaKnown RBP8.98□□□□□ -0.97
ATG4A-201ENST00000343524 RPS6KL1Q9Y6S9 549 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 PIK3C2AO00443 1686 aa8.98□□□□□ -0.97
ATG4A-201ENST00000343524 PI4KAP2A4QPH2 592 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 CCT8L1PA6NM43 557 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 E7ENQ6 273 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 TK2O00142 265 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 HRO43593 1189 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 SMIM24O75264 130 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 WFS1O76024 890 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 HSPA9P38646 679 aaKnown RBP8.97□□□□□ -0.97
ATG4A-201ENST00000343524 PSEN2P49810 448 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 ZNF131P52739 623 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 LBRQ14739 615 aaKnown RBP8.97□□□□□ -0.97
ATG4A-201ENST00000343524 KRT31Q15323 416 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 TTF1Q15361 905 aaPredicted RBP8.97□□□□□ -0.97
ATG4A-201ENST00000343524 SAFBQ15424 915 aaKnown RBP eCLIP8.97□□□□□ -0.97
ATG4A-201ENST00000343524 MEA1Q16626 185 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 RILPL1Q5EBL4 403 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 NFXL1Q6ZNB6 911 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 MAATS1Q7Z4T9 603 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 APBB1IPQ7Z5R6 666 aaPredicted RBP8.97□□□□□ -0.97
ATG4A-201ENST00000343524 CREG2Q8IUH2 290 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 PI4KAP1Q8N8J0 262 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 CENPTQ96BT3 561 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 IFT74Q96LB3 600 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 HAUS7Q99871 368 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 OSBPL1AQ9BXW6 950 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 NDST4Q9H3R1 872 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 SLC5A4Q9NY91 659 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 ANKIB1Q9P2G1 1089 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 SERTAD1Q9UHV2 236 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 SLC12A6Q9UHW9 1150 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 RWDD2AQ9UIY3 292 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 STK36Q9NRP7 1315 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 ECM29Q5VYK3 1845 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 GRID2IPA4D2P6 1211 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 B4DLN1 442 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 ATP4AP20648 1035 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 PTPREP23469 700 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 ALDH3A1P30838 453 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 PPP2R2AP63151 447 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 LACTBP83111 547 aaPredicted RBP8.97□□□□□ -0.97
ATG4A-201ENST00000343524 CDK17Q00537 523 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 SPA17Q15506 151 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 SGSM1Q2NKQ1 1148 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 CFAP221Q4G0U5 840 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 KRT40Q6A162 431 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 OTUD7BQ6GQQ9 843 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.97□□□□□ -0.97
ATG4A-201ENST00000343524 KIRREL3Q8IZU9 778 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 NBPF15Q8N660 670 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 ZNF570Q96NI8 536 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 INCENPQ9NQS7 918 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 DMGDHQ9UI17 866 aaKnown RBP8.97□□□□□ -0.97
ATG4A-201ENST00000343524 CAPN11Q9UMQ6 739 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 PA2G4Q9UQ80 394 aaKnown RBP8.97□□□□□ -0.97
ATG4A-201ENST00000343524 CPDO75976 1380 aa8.97□□□□□ -0.97
ATG4A-201ENST00000343524 QSER1Q2KHR3 1735 aa8.96□□□□□ -0.97
ATG4A-201ENST00000343524 PDE2AO00408 941 aaPredicted RBP8.96□□□□□ -0.97
ATG4A-201ENST00000343524 SH2B2O14492 632 aaPredicted RBP8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms