RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 PDLIM2Q96JY6 352 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 KCNMB3Q9NPA1 279 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 ADAMTS5Q9UNA0 930 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 CSADQ9Y600 493 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 VWA5AO00534 786 aa17.47■□□□□ 0.39
LIMS1-202ENST00000338045 NF2P35240 595 aa17.47■□□□□ 0.39
LIMS1-202ENST00000338045 HSD17B4P51659 736 aa17.47■□□□□ 0.39
LIMS1-202ENST00000338045 KARSQ15046 597 aaKnown RBP17.47■□□□□ 0.39
LIMS1-202ENST00000338045 Q4G0T1 1027 aa17.47■□□□□ 0.39
LIMS1-202ENST00000338045 GRAMD1CQ8IYS0 662 aa17.47■□□□□ 0.39
LIMS1-202ENST00000338045 TMOD4Q9NZQ9 345 aa17.47■□□□□ 0.39
LIMS1-202ENST00000338045 BIN1O00499 593 aa17.46■□□□□ 0.39
LIMS1-202ENST00000338045 ZBED4O75132 1171 aa17.46■□□□□ 0.39
LIMS1-202ENST00000338045 TMEM266Q2M3C6 531 aa17.46■□□□□ 0.39
LIMS1-202ENST00000338045 NAALADL2Q58DX5 795 aa17.46■□□□□ 0.39
LIMS1-202ENST00000338045 CATSPERGQ6ZRH7 1159 aa17.46■□□□□ 0.39
LIMS1-202ENST00000338045 CABP7Q86V35 215 aa17.46■□□□□ 0.39
LIMS1-202ENST00000338045 REPS2Q8NFH8 660 aa17.46■□□□□ 0.39
LIMS1-202ENST00000338045 BPIFA3Q9BQP9 254 aa17.46■□□□□ 0.39
LIMS1-202ENST00000338045 MMTAG2Q9BU76 263 aaKnown RBP17.46■□□□□ 0.39
LIMS1-202ENST00000338045 NAT10Q9H0A0 1025 aaKnown RBP17.46■□□□□ 0.39
LIMS1-202ENST00000338045 TBX3O15119 743 aa17.46■□□□□ 0.38
LIMS1-202ENST00000338045 DSG3P32926 999 aa17.46■□□□□ 0.38
LIMS1-202ENST00000338045 ANKRD13AQ8IZ07 590 aa17.46■□□□□ 0.38
LIMS1-202ENST00000338045 SAMD3Q8N6K7 520 aa17.46■□□□□ 0.38
LIMS1-202ENST00000338045 TRIML1Q8N9V2 468 aa17.46■□□□□ 0.38
LIMS1-202ENST00000338045 SMARCE1Q969G3 411 aa17.46■□□□□ 0.38
LIMS1-202ENST00000338045 LENG9Q96B70 501 aa17.46■□□□□ 0.38
LIMS1-202ENST00000338045 ATG4CQ96DT6 458 aa17.46■□□□□ 0.38
LIMS1-202ENST00000338045 MTRQ99707 1265 aa17.46■□□□□ 0.38
LIMS1-202ENST00000338045 RAB34Q9BZG1 259 aa17.46■□□□□ 0.38
LIMS1-202ENST00000338045 TTC12Q9H892 705 aaPredicted RBP17.46■□□□□ 0.38
LIMS1-202ENST00000338045 RAVER2Q9HCJ3 691 aaKnown RBP17.46■□□□□ 0.38
LIMS1-202ENST00000338045 CCDC39Q9UFE4 941 aa17.46■□□□□ 0.38
LIMS1-202ENST00000338045 MAN1B1Q9UKM7 699 aa17.46■□□□□ 0.38
LIMS1-202ENST00000338045 MYPNQ86TC9 1320 aa17.45■□□□□ 0.38
LIMS1-202ENST00000338045 STAT6P42226 847 aa17.45■□□□□ 0.38
LIMS1-202ENST00000338045 OAZ1P54368 228 aa17.45■□□□□ 0.38
LIMS1-202ENST00000338045 DPYDQ12882 1025 aa17.45■□□□□ 0.38
LIMS1-202ENST00000338045 COG2Q14746 738 aa17.45■□□□□ 0.38
LIMS1-202ENST00000338045 EAPPQ56P03 285 aaPredicted RBP17.45■□□□□ 0.38
LIMS1-202ENST00000338045 RRAGBQ5VZM2 374 aa17.45■□□□□ 0.38
LIMS1-202ENST00000338045 FCHSD1Q86WN1 690 aa17.45■□□□□ 0.38
LIMS1-202ENST00000338045 MCF2L2Q86YR7 1114 aa17.45■□□□□ 0.38
LIMS1-202ENST00000338045 CUEDC2Q9H467 287 aa17.45■□□□□ 0.38
LIMS1-202ENST00000338045 MAP3K20Q9NYL2 800 aaKnown RBP17.45■□□□□ 0.38
LIMS1-202ENST00000338045 PTPRFP10586 1907 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 FAM86B1E9PN63 330 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 NFIBO00712 420 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 FAM86B2P0C5J1 330 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 BMP6P22004 513 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 PPATQ06203 517 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 DHX40Q8IX18 779 aaKnown RBP17.44■□□□□ 0.38
LIMS1-202ENST00000338045 CPXCR1Q8N123 301 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 ETNPPLQ8TBG4 499 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 WNK4Q96J92 1243 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 EHMT1Q9H9B1 1298 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 LRWD1Q9UFC0 647 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 ATP2A1O14983 1001 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 SMC2O95347 1197 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 AFMP43652 599 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 MORC3Q14149 939 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 ERO1BQ86YB8 467 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 SLFN12Q8IYM2 578 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 CNKSR2Q8WXI2 1034 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 GSDMAQ96QA5 445 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 MAGEF1Q9HAY2 307 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 PCDHA12Q9UN75 941 aa17.44■□□□□ 0.38
LIMS1-202ENST00000338045 SPDYE5A6NIY4 337 aa17.43■□□□□ 0.38
LIMS1-202ENST00000338045 GTPBP6O43824 516 aaPredicted RBP17.43■□□□□ 0.38
LIMS1-202ENST00000338045 ALAS1P13196 640 aa17.43■□□□□ 0.38
LIMS1-202ENST00000338045 PRR16Q569H4 304 aa17.43■□□□□ 0.38
LIMS1-202ENST00000338045 LRRC15Q8TF66 581 aa17.43■□□□□ 0.38
LIMS1-202ENST00000338045 FAM20AQ96MK3 541 aa17.43■□□□□ 0.38
LIMS1-202ENST00000338045 KBTBD4Q9NVX7 518 aa17.43■□□□□ 0.38
LIMS1-202ENST00000338045 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.43■□□□□ 0.38
LIMS1-202ENST00000338045 CTDP1Q9Y5B0 961 aaPredicted RBP17.43■□□□□ 0.38
LIMS1-202ENST00000338045 RPTORQ8N122 1335 aa17.43■□□□□ 0.38
LIMS1-202ENST00000338045 IGLV3-22A0A075B6J6 115 aa17.42■□□□□ 0.38
LIMS1-202ENST00000338045 POTEMA6NI47 508 aa17.42■□□□□ 0.38
LIMS1-202ENST00000338045 PLCG1P19174 1290 aa17.42■□□□□ 0.38
LIMS1-202ENST00000338045 MUM1L1Q5H9M0 696 aa17.42■□□□□ 0.38
LIMS1-202ENST00000338045 ISM2Q6H9L7 571 aa17.42■□□□□ 0.38
LIMS1-202ENST00000338045 MOB2Q70IA6 237 aa17.42■□□□□ 0.38
LIMS1-202ENST00000338045 RASSF8Q8NHQ8 419 aa17.42■□□□□ 0.38
LIMS1-202ENST00000338045 CLMNQ96JQ2 1002 aa17.42■□□□□ 0.38
LIMS1-202ENST00000338045 HOXC10Q9NYD6 342 aa17.42■□□□□ 0.38
LIMS1-202ENST00000338045 ZNF214Q9UL59 606 aaPredicted RBP17.42■□□□□ 0.38
LIMS1-202ENST00000338045 RABGAP1Q9Y3P9 1069 aa17.42■□□□□ 0.38
LIMS1-202ENST00000338045 A0A0G2JLL6 359 aaPredicted RBP17.41■□□□□ 0.38
LIMS1-202ENST00000338045 CXCL11O14625 94 aa17.41■□□□□ 0.38
LIMS1-202ENST00000338045 AP5Z1O43299 807 aa17.41■□□□□ 0.38
LIMS1-202ENST00000338045 MYL1P05976 194 aa17.41■□□□□ 0.38
LIMS1-202ENST00000338045 PRRT2Q7Z6L0 340 aaPredicted RBP17.41■□□□□ 0.38
LIMS1-202ENST00000338045 CALML4Q96GE6 196 aa17.41■□□□□ 0.38
LIMS1-202ENST00000338045 ELP3Q9H9T3 547 aa17.41■□□□□ 0.38
LIMS1-202ENST00000338045 COL20A1Q9P218 1284 aa17.41■□□□□ 0.38
LIMS1-202ENST00000338045 KCNH4Q9UQ05 1017 aa17.41■□□□□ 0.38
LIMS1-202ENST00000338045 LOC285556D6RIA3 1793 aa17.41■□□□□ 0.38
LIMS1-202ENST00000338045 SPDYE16A6NNV3 312 aaPredicted RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms