RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 TDRD3Q9H7E2 651 aaKnown RBP11.15□□□□□ -0.62
CHD3-201ENST00000330494 ZNF131P52739 623 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 EXOC3L4Q17RC7 722 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 SPATA1Q5VX52 437 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 TTBK2Q6IQ55 1244 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 KRT26Q7Z3Y9 468 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 CTAGE3PQ8IX95 158 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 BANK1Q8NDB2 785 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 NEDD4P46934 1319 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 CASP14P31944 242 aa11.15□□□□□ -0.63
CHD3-201ENST00000330494 TPD52P55327 224 aaPredicted RBP11.15□□□□□ -0.63
CHD3-201ENST00000330494 TUBB4BP68371 445 aa11.15□□□□□ -0.63
CHD3-201ENST00000330494 CCDC93Q567U6 631 aa11.15□□□□□ -0.63
CHD3-201ENST00000330494 EPSTI1Q96J88 318 aa11.15□□□□□ -0.63
CHD3-201ENST00000330494 BUB1BO60566 1050 aaPredicted RBP11.15□□□□□ -0.63
CHD3-201ENST00000330494 CYP2E1P05181 493 aaPredicted RBP11.15□□□□□ -0.63
CHD3-201ENST00000330494 NR2F2P24468 414 aa11.15□□□□□ -0.63
CHD3-201ENST00000330494 ATP5DP30049 168 aa11.15□□□□□ -0.63
CHD3-201ENST00000330494 GALNT17Q6IS24 598 aa11.15□□□□□ -0.63
CHD3-201ENST00000330494 C4orf50Q6ZRC1 276 aa11.15□□□□□ -0.63
CHD3-201ENST00000330494 NSMCE1Q8WV22 266 aa11.15□□□□□ -0.63
CHD3-201ENST00000330494 TUBGCP2Q9BSJ2 902 aa11.15□□□□□ -0.63
CHD3-201ENST00000330494 RNF26Q9BY78 433 aaPredicted RBP11.15□□□□□ -0.63
CHD3-201ENST00000330494 BSDC1Q9NW68 430 aaPredicted RBP11.15□□□□□ -0.63
CHD3-201ENST00000330494 PI4KBQ9UBF8 816 aa11.15□□□□□ -0.63
CHD3-201ENST00000330494 PARP2Q9UGN5 583 aa11.15□□□□□ -0.63
CHD3-201ENST00000330494 EIF2AK2P19525 551 aaKnown RBP11.14□□□□□ -0.63
CHD3-201ENST00000330494 LACTBP83111 547 aaPredicted RBP11.14□□□□□ -0.63
CHD3-201ENST00000330494 GPATCH4Q5T3I0 446 aaKnown RBP11.14□□□□□ -0.63
CHD3-201ENST00000330494 DENND2CQ68D51 928 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 VPS52Q8N1B4 723 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 KMT5AQ9NQR1 393 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 NPR1P16066 1061 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 CTTNQ14247 550 aaKnown RBP11.14□□□□□ -0.63
CHD3-201ENST00000330494 KMT5BQ4FZB7 885 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 FAM160B1Q5W0V3 765 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 CCDC17Q96LX7 622 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 FAM184BQ9ULE4 1060 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 GH2P01242 217 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 MESDQ14696 234 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 CDC37Q16543 378 aaPredicted RBP11.14□□□□□ -0.63
CHD3-201ENST00000330494 CYB5R4Q7L1T6 521 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 MIPOL1Q8TD10 442 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 CELF1Q92879 486 aaKnown RBP11.14□□□□□ -0.63
CHD3-201ENST00000330494 CEP170P1Q96L14 293 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 RAB20Q9NX57 234 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 OSBPP22059 807 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 RBM6P78332 1123 aaKnown RBP11.14□□□□□ -0.63
CHD3-201ENST00000330494 RBL2Q08999 1139 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 IWS1Q96ST2 819 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 OSBPL3Q9H4L5 887 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 NRBP2Q9NSY0 501 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 LARSQ9P2J5 1176 aaKnown RBP11.14□□□□□ -0.63
CHD3-201ENST00000330494 MINPP1Q9UNW1 487 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 SRGAP2CP0DJJ0 459 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 KIF23Q02241 960 aaPredicted RBP11.14□□□□□ -0.63
CHD3-201ENST00000330494 PSMD6Q15008 389 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 SLC39A14Q15043 492 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 HHATQ5VTY9 493 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 ARFGAP2Q8N6H7 521 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 PLA2R1Q13018 1463 aa11.14□□□□□ -0.63
CHD3-201ENST00000330494 ZNF521Q96K83 1311 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 CCND2P30279 289 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 CXCR5P32302 372 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 DDIT3P35638 169 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 NME8Q8N427 588 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 KANSL2Q9H9L4 492 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 PYCARDQ9ULZ3 195 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 GOLGA8IPA6NC78 632 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 GOLGA8JA6NMD2 632 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 NDUFAB1O14561 156 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 CASP1P29466 404 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 ALDH3A1P30838 453 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 ADCY8P40145 1251 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 ERCC6LQ2NKX8 1250 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 TRIM50Q86XT4 487 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 STIM2Q9P246 746 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 ABT1Q9ULW3 272 aaKnown RBP11.13□□□□□ -0.63
CHD3-201ENST00000330494 THAP12O43422 761 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 CRKP46108 304 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 ZNF277Q9NRM2 450 aaPredicted RBP11.13□□□□□ -0.63
CHD3-201ENST00000330494 USP17L5A8MUK1 530 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 PLCG1P19174 1290 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 SNX1Q13596 522 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 CEP85LQ5SZL2 805 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 PALM2Q8IXS6 379 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 TTLL6Q8N841 843 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 RPS6KC1Q96S38 1066 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 KRT12Q99456 494 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.13□□□□□ -0.631e-5■■■■□ 19.8
CHD3-201ENST00000330494 LPXNO60711 386 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 PCP11498 1178 aaKnown RBP11.13□□□□□ -0.63
CHD3-201ENST00000330494 OAS2P29728 719 aaKnown RBP11.13□□□□□ -0.63
CHD3-201ENST00000330494 PAK2Q13177 524 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 TBC1D10CQ8IV04 446 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 NLRP7Q8WX94 980 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 SPDYE16A6NNV3 312 aaPredicted RBP11.13□□□□□ -0.63
CHD3-201ENST00000330494 H7C1W4 665 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 ZMYND10O75800 440 aa11.13□□□□□ -0.63
CHD3-201ENST00000330494 EHHADHQ08426 723 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms