RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 ADALQ6DHV7 355 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 ACAD9Q9H845 621 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 ATP2A1O14983 1001 aa11.37□□□□□ -0.59
HMGB3-201ENST00000325307 SPATC1LQ9H0A9 340 aa11.37□□□□□ -0.59
HMGB3-201ENST00000325307 TLL2Q9Y6L7 1015 aa11.37□□□□□ -0.59
HMGB3-201ENST00000325307 VWA3AA6NCI4 1184 aa11.37□□□□□ -0.59
HMGB3-201ENST00000325307 CUTAO60888 179 aa11.37□□□□□ -0.59
HMGB3-201ENST00000325307 RPS6P62753 249 aaKnown RBP11.37□□□□□ -0.59
HMGB3-201ENST00000325307 ATP2C1P98194 919 aaPredicted RBP11.37□□□□□ -0.59
HMGB3-201ENST00000325307 TKFCQ3LXA3 575 aa11.37□□□□□ -0.59
HMGB3-201ENST00000325307 SPECC1Q5M775 1068 aa11.37□□□□□ -0.59
HMGB3-201ENST00000325307 LRSAM1Q6UWE0 723 aa11.37□□□□□ -0.59
HMGB3-201ENST00000325307 ZNF784Q8NCA9 323 aaPredicted RBP11.37□□□□□ -0.59
HMGB3-201ENST00000325307 DDX25Q9UHL0 483 aaKnown RBP11.37□□□□□ -0.59
HMGB3-201ENST00000325307 LOC285556D6RIA3 1793 aa11.37□□□□□ -0.59
HMGB3-201ENST00000325307 LIG1P18858 919 aa11.37□□□□□ -0.59
HMGB3-201ENST00000325307 SLC30A10Q6XR72 485 aa11.37□□□□□ -0.59
HMGB3-201ENST00000325307 ANKRD23Q86SG2 305 aa11.37□□□□□ -0.59
HMGB3-201ENST00000325307 MRPS27Q92552 414 aaKnown RBP11.37□□□□□ -0.59
HMGB3-201ENST00000325307 A0A1B0GVL5 298 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 SREBF1P36956 1147 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 HSD17B4P51659 736 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 BAATQ14032 418 aaPredicted RBP11.36□□□□□ -0.59
HMGB3-201ENST00000325307 SYAP1Q96A49 352 aaPredicted RBP11.36□□□□□ -0.59
HMGB3-201ENST00000325307 FERMT2Q96AC1 680 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 NAP1L4Q99733 375 aaKnown RBP11.36□□□□□ -0.59
HMGB3-201ENST00000325307 TMEM60Q9H2L4 133 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 FBXO2Q9UK22 296 aaPredicted RBP11.36□□□□□ -0.59
HMGB3-201ENST00000325307 RABGAP1Q9Y3P9 1069 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 MANSC4A6NHS7 340 aaPredicted RBP11.36□□□□□ -0.59
HMGB3-201ENST00000325307 PTPREP23469 700 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 USP11P51784 963 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 GRIN1Q05586 938 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 CALCRLQ16602 461 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 AXDND1Q5T1B0 1012 aaPredicted RBP11.36□□□□□ -0.59
HMGB3-201ENST00000325307 POTEEQ6S8J3 1075 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 POTEDQ86YR6 584 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 ANKRD35Q8N283 1001 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 SYTL5Q8TDW5 730 aaPredicted RBP11.36□□□□□ -0.59
HMGB3-201ENST00000325307 UIMC1Q96RL1 719 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 TXNRD2Q9NNW7 524 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 SRPRBQ9Y5M8 271 aaKnown RBP11.36□□□□□ -0.59
HMGB3-201ENST00000325307 A0A1W2PQ27 194 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 A0A1W2PQ64 194 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 A0A1W2PQD8 194 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 OR52Z1P0C646 297 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 GCFC2P16383 781 aaKnown RBP11.36□□□□□ -0.59
HMGB3-201ENST00000325307 PRR16Q569H4 304 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 DTHD1Q6ZMT9 781 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 RIOX2Q8IUF8 465 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 CCDC102AQ96A19 550 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 MOV10L1Q9BXT6 1211 aaKnown RBP11.36□□□□□ -0.59
HMGB3-201ENST00000325307 CSRNP2Q9H175 543 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 RBPJLQ9UBG7 517 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 FBXO40Q9UH90 709 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 RLFQ13129 1914 aa11.36□□□□□ -0.59
HMGB3-201ENST00000325307 SLC37A4O43826 429 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 ANKRD13CQ8N6S4 541 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 CHST13Q8NET6 341 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 PARK7Q99497 189 aaKnown RBP11.35□□□□□ -0.59
HMGB3-201ENST00000325307 PTPN18Q99952 460 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 GOLPH3LQ9H4A5 285 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 DACT1Q9NYF0 836 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 COL20A1Q9P218 1284 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 KCNG1Q9UIX4 513 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 SLC45A1Q9Y2W3 748 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 PARP14Q460N5 1801 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 COL11A1P12107 1806 aaPredicted RBP11.35□□□□□ -0.59
HMGB3-201ENST00000325307 SLC10A3P09131 477 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 ERCC3P19447 782 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 EIF2AK2P19525 551 aaKnown RBP11.35□□□□□ -0.59
HMGB3-201ENST00000325307 TERF1P54274 439 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 FSTL1Q12841 308 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 ARHGEF16Q5VV41 709 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 PPP4R3AQ6IN85 833 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 GTF3C2Q8WUA4 911 aaPredicted RBP11.35□□□□□ -0.59
HMGB3-201ENST00000325307 TAAR1Q96RJ0 339 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 RMDN3Q96TC7 470 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 A1CFQ9NQ94 594 aaKnown RBP11.35□□□□□ -0.59
HMGB3-201ENST00000325307 FAM13BQ9NYF5 915 aa11.35□□□□□ -0.59
HMGB3-201ENST00000325307 MAP3K20Q9NYL2 800 aaKnown RBP11.35□□□□□ -0.59
HMGB3-201ENST00000325307 LAD1O00515 517 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 NR1I2O75469 434 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 CMA1P23946 247 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 TXKP42681 527 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 ORC2Q13416 577 aaPredicted RBP11.34□□□□□ -0.59
HMGB3-201ENST00000325307 ARL6IP4Q66PJ3 421 aaKnown RBP11.34□□□□□ -0.59
HMGB3-201ENST00000325307 SHC4Q6S5L8 630 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 SAMD3Q8N6K7 520 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 PURBQ96QR8 312 aaKnown RBP11.34□□□□□ -0.59
HMGB3-201ENST00000325307 CNMDO75829 334 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 SLC25A27O95847 323 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 ERVK-9P63128 1117 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 ERVK-24P63145 666 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 Q3C1V9 767 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 C4orf32Q8N8J7 132 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 GPRC5AQ8NFJ5 357 aa11.34□□□□□ -0.59
HMGB3-201ENST00000325307 KINO60870 393 aaKnown RBP11.34□□□□□ -0.59
HMGB3-201ENST00000325307 MYCLP12524 364 aaPredicted RBP11.34□□□□□ -0.59
HMGB3-201ENST00000325307 PFKFB1P16118 471 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms