RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 SHOX2O60902 331 aaPredicted RBP11.57□□□□□ -0.56
UPF3B-201ENST00000276201 VSNL1P62760 191 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 LRRC31Q6UY01 552 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 CYP26C1Q6V0L0 522 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 TBC1D10CQ8IV04 446 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 SUGP1Q8IWZ8 645 aaKnown RBP11.57□□□□□ -0.56
UPF3B-201ENST00000276201 EFCAB13Q8IY85 973 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 CNKSR2Q8WXI2 1034 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 CRNKL1Q9BZJ0 848 aaKnown RBP11.57□□□□□ -0.56
UPF3B-201ENST00000276201 CSADQ9Y600 493 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 SYNRGQ9UMZ2 1314 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 NAV1Q8NEY1 1877 aa11.56□□□□□ -0.56
UPF3B-201ENST00000276201 LAMB1P07942 1786 aa11.56□□□□□ -0.56
UPF3B-201ENST00000276201 PRPF6O94906 941 aaKnown RBP11.56□□□□□ -0.56
UPF3B-201ENST00000276201 USP14P54578 494 aa11.56□□□□□ -0.56
UPF3B-201ENST00000276201 MCM6Q14566 821 aa11.56□□□□□ -0.56
UPF3B-201ENST00000276201 PPP2R5BQ15173 497 aa11.56□□□□□ -0.56
UPF3B-201ENST00000276201 TTC31Q49AM3 519 aaPredicted RBP11.56□□□□□ -0.56
UPF3B-201ENST00000276201 SLC35F6Q8N357 371 aa11.56□□□□□ -0.56
UPF3B-201ENST00000276201 PYM1Q9BRP8 204 aaKnown RBP11.56□□□□□ -0.56
UPF3B-201ENST00000276201 DHX36Q9H2U1 1008 aaKnown RBP11.56□□□□□ -0.56
UPF3B-201ENST00000276201 CNNM2Q9H8M5 875 aa11.56□□□□□ -0.56
UPF3B-201ENST00000276201 MYH1P12882 1939 aa11.56□□□□□ -0.56
UPF3B-201ENST00000276201 EIF3CLB5ME19 914 aaKnown RBP11.56□□□□□ -0.56
UPF3B-201ENST00000276201 TEX33O43247 280 aa11.56□□□□□ -0.56
UPF3B-201ENST00000276201 TBC1D12O60347 775 aa11.56□□□□□ -0.56
UPF3B-201ENST00000276201 ZBTB48P10074 688 aaPredicted RBP11.56□□□□□ -0.56
UPF3B-201ENST00000276201 GYS2P54840 703 aa11.56□□□□□ -0.56
UPF3B-201ENST00000276201 SEMA3FQ13275 785 aa11.56□□□□□ -0.56
UPF3B-201ENST00000276201 TRAPPC11Q7Z392 1133 aa11.56□□□□□ -0.56
UPF3B-201ENST00000276201 OPTNQ96CV9 577 aa11.56□□□□□ -0.56
UPF3B-201ENST00000276201 EIF3CQ99613 913 aaKnown RBP11.56□□□□□ -0.56
UPF3B-201ENST00000276201 GEMIN8Q9NWZ8 242 aaKnown RBP11.56□□□□□ -0.56
UPF3B-201ENST00000276201 PUF60Q9UHX1 559 aaKnown RBP11.56□□□□□ -0.56
UPF3B-201ENST00000276201 MYO6Q9UM54 1294 aa11.56□□□□□ -0.56
UPF3B-201ENST00000276201 SPDYE5A6NIY4 337 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 PRKAB2O43741 272 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 GYPCP04921 128 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 SLC4A8Q2Y0W8 1093 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 NOL9Q5SY16 702 aaKnown RBP11.55□□□□□ -0.56
UPF3B-201ENST00000276201 CCDC148Q8NFR7 591 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 SDR42E1Q8WUS8 393 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 IRX2Q9BZI1 471 aaPredicted RBP11.55□□□□□ -0.56
UPF3B-201ENST00000276201 LZTFL1Q9NQ48 299 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 PI4KBQ9UBF8 816 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 PPP1R3GB7ZBB8 358 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 CLSTN1O94985 981 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 DEXIO95424 95 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 DPYDQ12882 1025 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 PAPD7Q5XG87 772 aaKnown RBP11.55□□□□□ -0.56
UPF3B-201ENST00000276201 DIS3L2Q8IYB7 885 aaKnown RBP11.55□□□□□ -0.56
UPF3B-201ENST00000276201 TMTC2Q8N394 836 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 AFAP1L1Q8TED9 768 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 FERMT2Q96AC1 680 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 OTUD5Q96G74 571 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 DNAJC18Q9H819 358 aa11.55□□□□□ -0.56
UPF3B-201ENST00000276201 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.55□□□□□ -0.56
UPF3B-201ENST00000276201 A0A087WUV0 522 aaPredicted RBP11.54□□□□□ -0.56
UPF3B-201ENST00000276201 CCDC196A0A1B0GTZ2 297 aa11.54□□□□□ -0.56
UPF3B-201ENST00000276201 GUCY2CP25092 1073 aa11.54□□□□□ -0.56
UPF3B-201ENST00000276201 CKAP4Q07065 602 aaKnown RBP11.54□□□□□ -0.56
UPF3B-201ENST00000276201 TRMT44Q8IYL2 757 aaKnown RBP11.54□□□□□ -0.56
UPF3B-201ENST00000276201 TRIM22Q8IYM9 498 aa11.54□□□□□ -0.56
UPF3B-201ENST00000276201 PHKBQ93100 1093 aa11.54□□□□□ -0.56
UPF3B-201ENST00000276201 AIDAQ96BJ3 306 aa11.54□□□□□ -0.56
UPF3B-201ENST00000276201 KRT23Q9C075 422 aa11.54□□□□□ -0.56
UPF3B-201ENST00000276201 HAUS4Q9H6D7 363 aa11.54□□□□□ -0.56
UPF3B-201ENST00000276201 DCP1AQ9NPI6 582 aaPredicted RBP11.54□□□□□ -0.56
UPF3B-201ENST00000276201 ABHD10Q9NUJ1 306 aa11.54□□□□□ -0.56
UPF3B-201ENST00000276201 HERC5Q9UII4 1024 aaKnown RBP11.54□□□□□ -0.56
UPF3B-201ENST00000276201 ATXN2Q99700 1313 aaKnown RBP11.54□□□□□ -0.56
UPF3B-201ENST00000276201 DOCK1Q14185 1865 aa11.54□□□□□ -0.56
UPF3B-201ENST00000276201 A6NNZ2 444 aa11.54□□□□□ -0.56
UPF3B-201ENST00000276201 LRRIQ3A6PVS8 624 aaPredicted RBP11.54□□□□□ -0.56
UPF3B-201ENST00000276201 N4BP1O75113 896 aaKnown RBP11.54□□□□□ -0.56
UPF3B-201ENST00000276201 SYF2O95926 243 aaKnown RBP11.54□□□□□ -0.56
UPF3B-201ENST00000276201 RRP1BQ14684 758 aaKnown RBP11.54□□□□□ -0.56
UPF3B-201ENST00000276201 TUBB8Q3ZCM7 444 aa11.54□□□□□ -0.56
UPF3B-201ENST00000276201 TMEM67Q5HYA8 995 aa11.54□□□□□ -0.56
UPF3B-201ENST00000276201 SWT1Q5T5J6 900 aaKnown RBP11.54□□□□□ -0.56
UPF3B-201ENST00000276201 ERO1BQ86YB8 467 aa11.54□□□□□ -0.56
UPF3B-201ENST00000276201 REM2Q8IYK8 340 aaPredicted RBP11.54□□□□□ -0.56
UPF3B-201ENST00000276201 SCYL3Q8IZE3 742 aa11.54□□□□□ -0.56
UPF3B-201ENST00000276201 EHBP1Q8NDI1 1231 aa11.54□□□□□ -0.56
UPF3B-201ENST00000276201 SLC12A7Q9Y666 1083 aa11.54□□□□□ -0.56
UPF3B-201ENST00000276201 MANSC4A6NHS7 340 aaPredicted RBP11.53□□□□□ -0.56
UPF3B-201ENST00000276201 BTBD18B2RXH4 712 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 HLA-DOAP06340 250 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 CASP14P31944 242 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 TM4SF4P48230 202 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 ERVK-24P63145 666 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 EVX2Q03828 476 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 ITIH3Q06033 890 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 DNAJC21Q5F1R6 531 aaKnown RBP11.53□□□□□ -0.56
UPF3B-201ENST00000276201 PAGE5Q96GU1 130 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 STRBPQ96SI9 672 aaKnown RBP11.53□□□□□ -0.56
UPF3B-201ENST00000276201 SLC26A6Q9BXS9 759 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 RWDD2AQ9UIY3 292 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 HPCAL4Q9UM19 191 aa11.53□□□□□ -0.56
UPF3B-201ENST00000276201 A0A1W2PQC6 194 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms