RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 TTC16Q8NEE8 873 aa13.96□□□□□ -0.17
USP40-201ENST00000251722 MYL10Q9BUA6 226 aa13.96□□□□□ -0.17
USP40-201ENST00000251722 FRMPD2Q68DX3 1309 aaPredicted RBP13.96□□□□□ -0.17
USP40-201ENST00000251722 SDR42E1Q8WUS8 393 aa13.96□□□□□ -0.17
USP40-201ENST00000251722 KIF2CQ99661 725 aa13.96□□□□□ -0.17
USP40-201ENST00000251722 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.96□□□□□ -0.17
USP40-201ENST00000251722 A0A1W2PQ27 194 aa13.96□□□□□ -0.17
USP40-201ENST00000251722 A0A1W2PQ64 194 aa13.96□□□□□ -0.17
USP40-201ENST00000251722 A0A1W2PQD8 194 aa13.96□□□□□ -0.17
USP40-201ENST00000251722 ZFXP17010 805 aaPredicted RBP13.96□□□□□ -0.17
USP40-201ENST00000251722 LIG3P49916 1009 aa13.96□□□□□ -0.17
USP40-201ENST00000251722 POLA2Q14181 598 aa13.96□□□□□ -0.17
USP40-201ENST00000251722 PAIP2BQ9ULR5 123 aaKnown RBP13.96□□□□□ -0.17
USP40-201ENST00000251722 TPX2Q9ULW0 747 aaKnown RBP13.96□□□□□ -0.17
USP40-201ENST00000251722 A0A0D9SFI3 127 aa13.96□□□□□ -0.18
USP40-201ENST00000251722 CHUKO15111 745 aa13.96□□□□□ -0.18
USP40-201ENST00000251722 PSAPP07602 524 aa13.96□□□□□ -0.18
USP40-201ENST00000251722 PSMD2Q13200 908 aa13.96□□□□□ -0.18
USP40-201ENST00000251722 P3H4Q92791 437 aa13.96□□□□□ -0.18
USP40-201ENST00000251722 ANKRD36BP1Q96IX9 119 aa13.96□□□□□ -0.18
USP40-201ENST00000251722 PLCB1Q9NQ66 1216 aa13.96□□□□□ -0.18
USP40-201ENST00000251722 PDE6CP51160 858 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 CERKQ8TCT0 537 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 RIC8AQ9NPQ8 531 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 HOXC10Q9NYD6 342 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 ZSCAN20P17040 1043 aaPredicted RBP13.95□□□□□ -0.18
USP40-201ENST00000251722 ARMCX5Q6P1M9 558 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 BBOF1Q8ND07 529 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 GJD4Q96KN9 370 aaPredicted RBP13.95□□□□□ -0.18
USP40-201ENST00000251722 ACCSQ96QU6 501 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 SPHKAPQ2M3C7 1700 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 BRD3Q15059 726 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 VPS72Q15906 364 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 DGKHQ86XP1 1220 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 ZNF577Q9BSK1 485 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 TMEM51Q9NW97 253 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 NFE2L3Q9Y4A8 694 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 AGLP35573 1532 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 THAP12O43422 761 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 STAM2O75886 525 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 RNF8O76064 485 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 OATP04181 439 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 GTF3C2Q8WUA4 911 aaPredicted RBP13.95□□□□□ -0.18
USP40-201ENST00000251722 TCP11Q8WWU5 503 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 RAB17Q9H0T7 212 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 RIPOR2Q9Y4F9 1068 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 FAM26FQ5R3K3 315 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 FYB2Q5VWT5 728 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 C8orf74Q6P047 294 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 LCMT1Q9UIC8 334 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 DLC1Q96QB1 1528 aa13.95□□□□□ -0.18
USP40-201ENST00000251722 CPA1P15085 419 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 TRMT2AQ8IZ69 625 aaKnown RBP13.94□□□□□ -0.18
USP40-201ENST00000251722 INO80BQ9C086 356 aaPredicted RBP13.94□□□□□ -0.18
USP40-201ENST00000251722 LZTFL1Q9NQ48 299 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 RAB20Q9NX57 234 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 CDC42BPAQ5VT25 1732 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 RPS6KA1Q15418 735 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 RUFY4Q6ZNE9 571 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 RNF10Q8N5U6 811 aaKnown RBP13.94□□□□□ -0.18
USP40-201ENST00000251722 NCOA3Q9Y6Q9 1424 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 WDR19Q8NEZ3 1342 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 F8W8V4 182 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 LIFRP42702 1097 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 JAK3P52333 1124 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 CFAP221Q4G0U5 840 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 FEM1BQ9UK73 627 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 PRPF3O43395 683 aaKnown RBP13.94□□□□□ -0.18
USP40-201ENST00000251722 MFAP3P55082 362 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 TRIM50Q86XT4 487 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 FBXO18Q8NFZ0 1043 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 BAIAP2L1Q9UHR4 511 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 DBNLQ9UJU6 430 aaKnown RBP13.94□□□□□ -0.18
USP40-201ENST00000251722 GLI2P10070 1586 aa13.94□□□□□ -0.18
USP40-201ENST00000251722 CAPN9O14815 690 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 GRIN3BO60391 1043 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 PSMC4P43686 418 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 MUM1L1Q5H9M0 696 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 MAP7D3Q8IWC1 876 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 SMC1BQ8NDV3 1235 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 PRPF31Q8WWY3 499 aaKnown RBP13.93□□□□□ -0.18
USP40-201ENST00000251722 STMN2Q93045 179 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 CACYBPQ9HB71 228 aaKnown RBP13.93□□□□□ -0.18
USP40-201ENST00000251722 PRDM4Q9UKN5 801 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 AMFRQ9UKV5 643 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 BRD1O95696 1058 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 MAN1A1P33908 653 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 GABPAQ06546 454 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 RASA3Q14644 834 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 MAEAQ7L5Y9 396 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 DDX23Q9BUQ8 820 aaKnown RBP13.93□□□□□ -0.18
USP40-201ENST00000251722 RBSNQ9H1K0 784 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 IPO11Q9UI26 975 aaKnown RBP13.93□□□□□ -0.18
USP40-201ENST00000251722 MMP14P50281 582 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 PHLDB2Q86SQ0 1253 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 SDCCAG8Q86SQ7 713 aaPredicted RBP13.93□□□□□ -0.18
USP40-201ENST00000251722 DHTKD1Q96HY7 919 aaPredicted RBP13.93□□□□□ -0.18
USP40-201ENST00000251722 GSDMAQ96QA5 445 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 ZSWIM4Q9H7M6 989 aa13.93□□□□□ -0.18
USP40-201ENST00000251722 DBNDD1Q9H9R9 158 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms