RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 PPIGQ13427 754 aaKnown RBP eCLIP25.81■■□□□ 1.72
VTI1B-201ENST00000216456 PWP2Q15269 919 aaKnown RBP25.81■■□□□ 1.72
VTI1B-201ENST00000216456 SEPT14Q6ZU15 432 aa25.81■■□□□ 1.72
VTI1B-201ENST00000216456 RGS22Q8NE09 1264 aa25.81■■□□□ 1.72
VTI1B-201ENST00000216456 MYLIPQ8WY64 445 aa25.81■■□□□ 1.72
VTI1B-201ENST00000216456 NOC4LQ9BVI4 516 aaKnown RBP25.81■■□□□ 1.72
VTI1B-201ENST00000216456 WNT8AQ9H1J5 351 aa25.81■■□□□ 1.72
VTI1B-201ENST00000216456 E7EWF7 191 aa25.8■■□□□ 1.72
VTI1B-201ENST00000216456 CYP2C9P11712 490 aa25.8■■□□□ 1.72
VTI1B-201ENST00000216456 PBX2P40425 430 aa25.8■■□□□ 1.72
VTI1B-201ENST00000216456 ANTXR2P58335 489 aa25.8■■□□□ 1.72
VTI1B-201ENST00000216456 TMEM199Q8N511 208 aa25.8■■□□□ 1.72
VTI1B-201ENST00000216456 SCFD2Q8WU76 684 aa25.8■■□□□ 1.72
VTI1B-201ENST00000216456 RUFY2Q8WXA3 655 aa25.8■■□□□ 1.72
VTI1B-201ENST00000216456 ALDH8A1Q9H2A2 487 aaPredicted RBP25.8■■□□□ 1.72
VTI1B-201ENST00000216456 GPHNQ9NQX3 736 aaPredicted RBP25.8■■□□□ 1.72
VTI1B-201ENST00000216456 PALM3A6NDB9 673 aaPredicted RBP25.79■■□□□ 1.72
VTI1B-201ENST00000216456 IFIT3O14879 490 aaKnown RBP25.79■■□□□ 1.72
VTI1B-201ENST00000216456 CFBP00751 764 aa25.79■■□□□ 1.72
VTI1B-201ENST00000216456 EIF2AK2P19525 551 aaKnown RBP25.79■■□□□ 1.72
VTI1B-201ENST00000216456 LY6KQ17RY6 165 aa25.79■■□□□ 1.72
VTI1B-201ENST00000216456 VWCEQ96DN2 955 aa25.79■■□□□ 1.72
VTI1B-201ENST00000216456 SCLYQ96I15 445 aa25.79■■□□□ 1.72
VTI1B-201ENST00000216456 CXXC1Q9P0U4 656 aaPredicted RBP25.79■■□□□ 1.72
VTI1B-201ENST00000216456 U3KPZ7 1027 aaPredicted RBP25.79■■□□□ 1.72
VTI1B-201ENST00000216456 CPT1AP50416 773 aa25.78■■□□□ 1.72
VTI1B-201ENST00000216456 TRDNQ13061 729 aa25.78■■□□□ 1.72
VTI1B-201ENST00000216456 CCDC62Q6P9F0 684 aa25.78■■□□□ 1.72
VTI1B-201ENST00000216456 HOMER1Q86YM7 354 aa25.78■■□□□ 1.72
VTI1B-201ENST00000216456 MTMR8Q96EF0 704 aa25.78■■□□□ 1.72
VTI1B-201ENST00000216456 ZFP91Q96JP5 570 aaPredicted RBP25.78■■□□□ 1.72
VTI1B-201ENST00000216456 RMDN3Q96TC7 470 aa25.78■■□□□ 1.72
VTI1B-201ENST00000216456 MRPL11Q9Y3B7 192 aaKnown RBP25.78■■□□□ 1.72
VTI1B-201ENST00000216456 PRUNE2Q8WUY3 3088 aa25.77■■□□□ 1.72
VTI1B-201ENST00000216456 CYTH3O43739 400 aa25.77■■□□□ 1.72
VTI1B-201ENST00000216456 DNAJB2P25686 324 aa25.77■■□□□ 1.72
VTI1B-201ENST00000216456 HOXA13P31271 388 aaPredicted RBP25.77■■□□□ 1.72
VTI1B-201ENST00000216456 CHMP4BP1P59074 171 aa25.77■■□□□ 1.72
VTI1B-201ENST00000216456 GRM4Q14833 912 aa25.77■■□□□ 1.72
VTI1B-201ENST00000216456 NBPF20Q3BBV1 942 aa25.77■■□□□ 1.72
VTI1B-201ENST00000216456 RASIP1Q5U651 963 aa25.77■■□□□ 1.72
VTI1B-201ENST00000216456 PIGSQ96S52 555 aa25.77■■□□□ 1.72
VTI1B-201ENST00000216456 MTG1Q9BT17 334 aaPredicted RBP25.77■■□□□ 1.72
VTI1B-201ENST00000216456 IL23AQ9NPF7 189 aa25.77■■□□□ 1.72
VTI1B-201ENST00000216456 POLR3EQ9NVU0 708 aa25.77■■□□□ 1.72
VTI1B-201ENST00000216456 RBM8AQ9Y5S9 174 aaKnown RBP25.77■■□□□ 1.72
VTI1B-201ENST00000216456 HSFX4A0A1B0GTS1 333 aaPredicted RBP25.76■■□□□ 1.71
VTI1B-201ENST00000216456 HSFX3A0A1B0GWH4 333 aaPredicted RBP25.76■■□□□ 1.71
VTI1B-201ENST00000216456 TTLL4Q14679 1199 aa25.76■■□□□ 1.71
VTI1B-201ENST00000216456 FAM47CQ5HY64 1035 aa25.76■■□□□ 1.71
VTI1B-201ENST00000216456 NSUN6Q8TEA1 469 aaKnown RBP25.76■■□□□ 1.71
VTI1B-201ENST00000216456 AFG1LQ8WV93 481 aa25.76■■□□□ 1.71
VTI1B-201ENST00000216456 PIBF1Q8WXW3 757 aa25.76■■□□□ 1.71
VTI1B-201ENST00000216456 MAP4K1Q92918 833 aa25.76■■□□□ 1.71
VTI1B-201ENST00000216456 AMNQ9BXJ7 453 aa25.76■■□□□ 1.71
VTI1B-201ENST00000216456 MYH6P13533 1939 aa25.75■■□□□ 1.71
VTI1B-201ENST00000216456 A6NJR5 290 aa25.75■■□□□ 1.71
VTI1B-201ENST00000216456 ZBTB5O15062 677 aa25.75■■□□□ 1.71
VTI1B-201ENST00000216456 SORBS3O60504 671 aa25.75■■□□□ 1.71
VTI1B-201ENST00000216456 GRIN2CQ14957 1233 aa25.75■■□□□ 1.71
VTI1B-201ENST00000216456 ARHGEF16Q5VV41 709 aa25.75■■□□□ 1.71
VTI1B-201ENST00000216456 OTOP2Q7RTS6 562 aa25.75■■□□□ 1.71
VTI1B-201ENST00000216456 RALYLQ86SE5 291 aaKnown RBP25.75■■□□□ 1.71
VTI1B-201ENST00000216456 MCF2L2Q86YR7 1114 aa25.75■■□□□ 1.71
VTI1B-201ENST00000216456 MPHOSPH6Q99547 160 aaKnown RBP25.75■■□□□ 1.71
VTI1B-201ENST00000216456 MYL10Q9BUA6 226 aa25.75■■□□□ 1.71
VTI1B-201ENST00000216456 PXMP2Q9NR77 195 aa25.75■■□□□ 1.71
VTI1B-201ENST00000216456 PCDHA1Q9Y5I3 950 aa25.75■■□□□ 1.71
VTI1B-201ENST00000216456 NKRFO15226 690 aaKnown RBP eCLIP25.74■■□□□ 1.71
VTI1B-201ENST00000216456 HSD17B4P51659 736 aa25.74■■□□□ 1.71
VTI1B-201ENST00000216456 ARHGAP1Q07960 439 aa25.74■■□□□ 1.71
VTI1B-201ENST00000216456 TROAPQ12815 778 aa25.74■■□□□ 1.71
VTI1B-201ENST00000216456 WTAPQ15007 396 aa25.74■■□□□ 1.71
VTI1B-201ENST00000216456 MB21D2Q8IYB1 491 aaPredicted RBP25.74■■□□□ 1.71
VTI1B-201ENST00000216456 NCOA7Q8NI08 942 aa25.74■■□□□ 1.71
VTI1B-201ENST00000216456 IL31RAQ8NI17 732 aa25.74■■□□□ 1.71
VTI1B-201ENST00000216456 PBX4Q9BYU1 374 aa25.74■■□□□ 1.71
VTI1B-201ENST00000216456 BAZ2BQ9UIF8 2168 aaKnown RBP25.73■■□□□ 1.71
VTI1B-201ENST00000216456 DLL1O00548 723 aa25.73■■□□□ 1.71
VTI1B-201ENST00000216456 STXBP2Q15833 593 aa25.73■■□□□ 1.71
VTI1B-201ENST00000216456 TMEM67Q5HYA8 995 aa25.73■■□□□ 1.71
VTI1B-201ENST00000216456 PSRC1Q6PGN9 363 aaPredicted RBP25.73■■□□□ 1.71
VTI1B-201ENST00000216456 IGDCC4Q8TDY8 1250 aa25.73■■□□□ 1.71
VTI1B-201ENST00000216456 CHD9Q3L8U1 2897 aa25.73■■□□□ 1.71
VTI1B-201ENST00000216456 SCN10AQ9Y5Y9 1956 aa25.73■■□□□ 1.71
VTI1B-201ENST00000216456 B4DLN1 442 aa25.72■■□□□ 1.71
VTI1B-201ENST00000216456 NR3C2P08235 984 aa25.72■■□□□ 1.71
VTI1B-201ENST00000216456 MMP3P08254 477 aa25.72■■□□□ 1.71
VTI1B-201ENST00000216456 MYCLP12524 364 aaPredicted RBP25.72■■□□□ 1.71
VTI1B-201ENST00000216456 MRPL12P52815 198 aaKnown RBP25.72■■□□□ 1.71
VTI1B-201ENST00000216456 LSG1Q9H089 658 aaKnown RBP25.72■■□□□ 1.71
VTI1B-201ENST00000216456 RIOX1Q9H6W3 641 aa25.72■■□□□ 1.71
VTI1B-201ENST00000216456 RGS20O76081 388 aa25.71■■□□□ 1.71
VTI1B-201ENST00000216456 FGBP02675 491 aa25.71■■□□□ 1.71
VTI1B-201ENST00000216456 HERVK_113Q902F9 699 aa25.71■■□□□ 1.71
VTI1B-201ENST00000216456 GPKOWQ92917 476 aaPredicted RBP eCLIP25.71■■□□□ 1.71
VTI1B-201ENST00000216456 TIFAQ96CG3 184 aa25.71■■□□□ 1.71
VTI1B-201ENST00000216456 IWS1Q96ST2 819 aa25.71■■□□□ 1.71
VTI1B-201ENST00000216456 DDX41Q9UJV9 622 aaKnown RBP25.71■■□□□ 1.71
VTI1B-201ENST00000216456 ERICH2A1L162 156 aa25.7■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms