RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 ARID4BQ4LE39 1312 aaPredicted RBP22.69■■□□□ 1.22
LINC00339-211ENST00000641009 CDC42BPBQ9Y5S2 1711 aa22.69■■□□□ 1.22
LINC00339-211ENST00000641009 ZFYVE16Q7Z3T8 1539 aa22.69■■□□□ 1.22
LINC00339-211ENST00000641009 CCDC18Q5T9S5 1454 aa22.69■■□□□ 1.22
LINC00339-211ENST00000641009 SCAPERQ9BY12 1400 aa22.68■■□□□ 1.22
LINC00339-211ENST00000641009 POGZQ7Z3K3 1410 aa22.67■■□□□ 1.22
LINC00339-211ENST00000641009 ARHGAP5Q13017 1502 aa22.66■■□□□ 1.22
LINC00339-211ENST00000641009 PTPRMP28827 1452 aa22.66■■□□□ 1.22
LINC00339-211ENST00000641009 YEATS2Q9ULM3 1422 aa22.66■■□□□ 1.22
LINC00339-211ENST00000641009 FYCO1Q9BQS8 1478 aa22.65■■□□□ 1.22
LINC00339-211ENST00000641009 EFCAB2Q5VUJ9 269 aa22.65■■□□□ 1.22
LINC00339-211ENST00000641009 MAGI2Q86UL8 1455 aa22.64■■□□□ 1.21
LINC00339-211ENST00000641009 RIMS1Q86UR5 1692 aaKnown RBP22.63■■□□□ 1.21
LINC00339-211ENST00000641009 PREX2Q70Z35 1606 aa22.63■■□□□ 1.21
LINC00339-211ENST00000641009 CDC42BPAQ5VT25 1732 aa22.61■■□□□ 1.21
LINC00339-211ENST00000641009 ZNF518AQ6AHZ1 1483 aa22.57■■□□□ 1.2
LINC00339-211ENST00000641009 FER1L4A9Z1Z3 1794 aa22.56■■□□□ 1.2
LINC00339-211ENST00000641009 KDM5CP41229 1560 aa22.55■■□□□ 1.2
LINC00339-211ENST00000641009 ITSN2Q9NZM3 1697 aa22.54■■□□□ 1.2
LINC00339-211ENST00000641009 ABCC1P33527 1531 aa22.53■■□□□ 1.2
LINC00339-211ENST00000641009 ATP10AO60312 1499 aa22.52■■□□□ 1.2
LINC00339-211ENST00000641009 AFAP1Q8N556 730 aa22.52■■□□□ 1.2
LINC00339-211ENST00000641009 C9orf84Q5VXU9 1444 aa22.51■■□□□ 1.19
LINC00339-211ENST00000641009 MLECQ14165 292 aa22.5■■□□□ 1.19
LINC00339-211ENST00000641009 ARHGEF12Q9NZN5 1544 aa22.5■■□□□ 1.19
LINC00339-211ENST00000641009 DIP2CQ9Y2E4 1556 aa22.48■■□□□ 1.19
LINC00339-211ENST00000641009 ABCA6Q8N139 1617 aa22.48■■□□□ 1.19
LINC00339-211ENST00000641009 CEP162Q5TB80 1403 aa22.46■■□□□ 1.19
LINC00339-211ENST00000641009 TRAPPC8Q9Y2L5 1435 aa22.46■■□□□ 1.19
LINC00339-211ENST00000641009 MYT1LQ9UL68 1186 aa22.46■■□□□ 1.19
LINC00339-211ENST00000641009 PLPPR3Q6T4P5 718 aa22.45■■□□□ 1.18
LINC00339-211ENST00000641009 SAMD9LQ8IVG5 1584 aa22.45■■□□□ 1.18
LINC00339-211ENST00000641009 LMTK3Q96Q04 1460 aa22.44■■□□□ 1.18
LINC00339-211ENST00000641009 KIDINS220Q9ULH0 1771 aa22.43■■□□□ 1.18
LINC00339-211ENST00000641009 GPATCH8Q9UKJ3 1502 aaKnown RBP22.43■■□□□ 1.18
LINC00339-211ENST00000641009 MLH3Q9UHC1 1453 aa22.43■■□□□ 1.18
LINC00339-211ENST00000641009 REREQ9P2R6 1566 aa22.41■■□□□ 1.18
LINC00339-211ENST00000641009 ZNF777Q9ULD5 760 aaPredicted RBP22.41■■□□□ 1.18
LINC00339-211ENST00000641009 SYCP2Q9BX26 1530 aa22.4■■□□□ 1.18
LINC00339-211ENST00000641009 MTUS2Q5JR59 1369 aa22.4■■□□□ 1.18
LINC00339-211ENST00000641009 EHBP1L1Q8N3D4 1523 aa22.36■■□□□ 1.17
LINC00339-211ENST00000641009 CCNB3Q8WWL7 1395 aa22.36■■□□□ 1.17
LINC00339-211ENST00000641009 ILDR1Q86SU0 546 aaPredicted RBP22.35■■□□□ 1.17
LINC00339-211ENST00000641009 TIAM1Q13009 1591 aa22.35■■□□□ 1.17
LINC00339-211ENST00000641009 CFDP1Q9UEE9 299 aaPredicted RBP22.33■■□□□ 1.16
LINC00339-211ENST00000641009 AGLP35573 1532 aa22.32■■□□□ 1.16
LINC00339-211ENST00000641009 HNRNPMP52272 730 aaKnown RBP eCLIP22.32■■□□□ 1.16
LINC00339-211ENST00000641009 PREX1Q8TCU6 1659 aa22.32■■□□□ 1.16
LINC00339-211ENST00000641009 LOC105371045A0A1W2PR82 267 aa22.31■■□□□ 1.16
LINC00339-211ENST00000641009 HSPA2P54652 639 aa22.3■■□□□ 1.16
LINC00339-211ENST00000641009 C3P01024 1663 aa22.3■■□□□ 1.16
LINC00339-211ENST00000641009 SUPT6HQ7KZ85 1726 aaKnown RBP22.3■■□□□ 1.16
LINC00339-211ENST00000641009 PLEKHH2Q8IVE3 1493 aa22.3■■□□□ 1.16
LINC00339-211ENST00000641009 CEBPAP49715 358 aaPredicted RBP22.29■■□□□ 1.16
LINC00339-211ENST00000641009 KIAA1107Q9UPP5 1409 aa22.29■■□□□ 1.16
LINC00339-211ENST00000641009 INO80Q9ULG1 1556 aaPredicted RBP22.29■■□□□ 1.16
LINC00339-211ENST00000641009 ATP7AQ04656 1500 aa22.28■■□□□ 1.16
LINC00339-211ENST00000641009 SETD1BQ9UPS6 1966 aaKnown RBP22.28■■□□□ 1.16
LINC00339-211ENST00000641009 SPAG9O60271 1321 aaKnown RBP22.27■■□□□ 1.16
LINC00339-211ENST00000641009 ZNF644Q9H582 1327 aaPredicted RBP22.24■■□□□ 1.15
LINC00339-211ENST00000641009 NCOA2Q15596 1464 aa22.21■■□□□ 1.15
LINC00339-211ENST00000641009 PLXNC1O60486 1568 aa22.21■■□□□ 1.15
LINC00339-211ENST00000641009 ADGBQ8N7X0 1667 aa22.21■■□□□ 1.15
LINC00339-211ENST00000641009 VPS8Q8N3P4 1428 aa22.2■■□□□ 1.15
LINC00339-211ENST00000641009 MBD5Q9P267 1494 aa22.19■■□□□ 1.14
LINC00339-211ENST00000641009 ESF1Q9H501 851 aaKnown RBP22.19■■□□□ 1.14
LINC00339-211ENST00000641009 MROH2AA6NES4 1674 aa22.19■■□□□ 1.14
LINC00339-211ENST00000641009 A2MP01023 1474 aa22.18■■□□□ 1.14
LINC00339-211ENST00000641009 CLTCQ00610 1675 aaKnown RBP22.16■■□□□ 1.14
LINC00339-211ENST00000641009 UHRF1BP1Q6BDS2 1440 aa22.16■■□□□ 1.14
LINC00339-211ENST00000641009 STRCQ7RTU9 1775 aa22.15■■□□□ 1.14
LINC00339-211ENST00000641009 CNTLNQ9NXG0 1405 aa22.15■■□□□ 1.14
LINC00339-211ENST00000641009 CAMSAP2Q08AD1 1489 aa22.15■■□□□ 1.14
LINC00339-211ENST00000641009 LRRC9Q6ZRR7 1453 aa22.13■■□□□ 1.13
LINC00339-211ENST00000641009 CCDC141Q6ZP82 1450 aa22.1■■□□□ 1.13
LINC00339-211ENST00000641009 RTEL1-TNFRSF6BF6WH68 1400 aa22.09■■□□□ 1.13
LINC00339-211ENST00000641009 MAP3K1Q13233 1512 aa22.07■■□□□ 1.12
LINC00339-211ENST00000641009 GGT6Q6P531 493 aa22.07■■□□□ 1.12
LINC00339-211ENST00000641009 FBXO41Q8TF61 875 aa22.07■■□□□ 1.12
LINC00339-211ENST00000641009 ZMYM3Q14202 1370 aa22.07■■□□□ 1.12
LINC00339-211ENST00000641009 ARHGEF5Q12774 1597 aa22.06■■□□□ 1.12
LINC00339-211ENST00000641009 KANK4Q5T7N3 995 aaPredicted RBP22.05■■□□□ 1.12
LINC00339-211ENST00000641009 NPATQ14207 1427 aa22.03■■□□□ 1.12
LINC00339-211ENST00000641009 DHX29Q7Z478 1369 aaKnown RBP22.02■■□□□ 1.12
LINC00339-211ENST00000641009 MYO3AQ8NEV4 1616 aa22.01■■□□□ 1.11
LINC00339-211ENST00000641009 RSPH4AQ5TD94 716 aa22.01■■□□□ 1.11
LINC00339-211ENST00000641009 ZNF142P52746 1687 aaPredicted RBP21.99■■□□□ 1.11
LINC00339-211ENST00000641009 PTPRKQ15262 1439 aa21.97■■□□□ 1.11
LINC00339-211ENST00000641009 CAMSAP1Q5T5Y3 1602 aa21.97■■□□□ 1.11
LINC00339-211ENST00000641009 MYOM3Q5VTT5 1437 aa21.97■■□□□ 1.11
LINC00339-211ENST00000641009 PPP6R1Q9UPN7 881 aa21.96■■□□□ 1.11
LINC00339-211ENST00000641009 DMRT2Q9Y5R5 561 aa21.96■■□□□ 1.11
LINC00339-211ENST00000641009 KIF3BO15066 747 aa21.96■■□□□ 1.11
LINC00339-211ENST00000641009 MAST1Q9Y2H9 1570 aa21.95■■□□□ 1.1
LINC00339-211ENST00000641009 TSPY4P0CV99 314 aa21.95■■□□□ 1.1
LINC00339-211ENST00000641009 TSPY10P0CW01 314 aa21.95■■□□□ 1.1
LINC00339-211ENST00000641009 NCOA1Q15788 1441 aa21.94■■□□□ 1.1
LINC00339-211ENST00000641009 CERKQ8TCT0 537 aa21.94■■□□□ 1.1
LINC00339-211ENST00000641009 MIA2Q96PC5 1412 aa21.93■■□□□ 1.1
LINC00339-211ENST00000641009 CEP170BQ9Y4F5 1589 aaPredicted RBP21.93■■□□□ 1.1
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