RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 MTUS2Q5JR59 1369 aa28.99■■■□□ 2.23
CLN3-259ENST00000637551 AKNAQ7Z591 1439 aa28.94■■■□□ 2.22
CLN3-259ENST00000637551 CDC42BPAQ5VT25 1732 aa28.93■■■□□ 2.22
CLN3-259ENST00000637551 CDC42BPBQ9Y5S2 1711 aa28.93■■■□□ 2.22
CLN3-259ENST00000637551 EFCAB2Q5VUJ9 269 aa28.91■■■□□ 2.22
CLN3-259ENST00000637551 ARHGAP5Q13017 1502 aa28.89■■■□□ 2.22
CLN3-259ENST00000637551 RICTORQ6R327 1708 aa28.89■■■□□ 2.22
CLN3-259ENST00000637551 SUPT6HQ7KZ85 1726 aaKnown RBP28.89■■■□□ 2.22
CLN3-259ENST00000637551 DENND4BO75064 1496 aaPredicted RBP28.89■■■□□ 2.22
CLN3-259ENST00000637551 ITSN2Q9NZM3 1697 aa28.88■■■□□ 2.21
CLN3-259ENST00000637551 ZMYM4Q5VZL5 1548 aa28.87■■■□□ 2.21
CLN3-259ENST00000637551 FRMPD1Q5SYB0 1578 aa28.87■■■□□ 2.21
CLN3-259ENST00000637551 LRRC9Q6ZRR7 1453 aa28.86■■■□□ 2.21
CLN3-259ENST00000637551 GPATCH8Q9UKJ3 1502 aaKnown RBP28.84■■■□□ 2.21
CLN3-259ENST00000637551 MAGI2Q86UL8 1455 aa28.82■■■□□ 2.2
CLN3-259ENST00000637551 POGZQ7Z3K3 1410 aa28.81■■■□□ 2.2
CLN3-259ENST00000637551 CCNB3Q8WWL7 1395 aa28.8■■■□□ 2.2
CLN3-259ENST00000637551 ABCC1P33527 1531 aa28.79■■■□□ 2.2
CLN3-259ENST00000637551 PLEKHH2Q8IVE3 1493 aa28.79■■■□□ 2.2
CLN3-259ENST00000637551 ZNF518AQ6AHZ1 1483 aa28.78■■■□□ 2.2
CLN3-259ENST00000637551 NCOA2Q15596 1464 aa28.78■■■□□ 2.2
CLN3-259ENST00000637551 SCAPERQ9BY12 1400 aa28.77■■■□□ 2.2
CLN3-259ENST00000637551 KDM5CP41229 1560 aa28.76■■■□□ 2.19
CLN3-259ENST00000637551 APLP2Q06481 763 aa28.75■■■□□ 2.19
CLN3-259ENST00000637551 KIAA1107Q9UPP5 1409 aa28.75■■■□□ 2.19
CLN3-259ENST00000637551 ARHGEF40Q8TER5 1519 aa28.74■■■□□ 2.19
CLN3-259ENST00000637551 SAMD9LQ8IVG5 1584 aa28.71■■■□□ 2.19
CLN3-259ENST00000637551 RAPGEF3O95398 923 aa28.7■■■□□ 2.18
CLN3-259ENST00000637551 CFDP1Q9UEE9 299 aaPredicted RBP28.68■■■□□ 2.18
CLN3-259ENST00000637551 PTPRMP28827 1452 aa28.66■■■□□ 2.18
CLN3-259ENST00000637551 ZFYVE16Q7Z3T8 1539 aa28.65■■■□□ 2.18
CLN3-259ENST00000637551 MLH3Q9UHC1 1453 aa28.65■■■□□ 2.18
CLN3-259ENST00000637551 MIA2Q96PC5 1412 aa28.63■■■□□ 2.17
CLN3-259ENST00000637551 ADAMTSL3P82987 1691 aa28.63■■■□□ 2.17
CLN3-259ENST00000637551 ARHGEF12Q9NZN5 1544 aa28.62■■■□□ 2.17
CLN3-259ENST00000637551 SYCP2Q9BX26 1530 aa28.61■■■□□ 2.17
CLN3-259ENST00000637551 KANK4Q5T7N3 995 aaPredicted RBP28.6■■■□□ 2.17
CLN3-259ENST00000637551 MYOM3Q5VTT5 1437 aa28.6■■■□□ 2.17
CLN3-259ENST00000637551 REREQ9P2R6 1566 aa28.59■■■□□ 2.17
CLN3-259ENST00000637551 TRAPPC8Q9Y2L5 1435 aa28.56■■■□□ 2.16
CLN3-259ENST00000637551 RSPH4AQ5TD94 716 aa28.55■■■□□ 2.16
CLN3-259ENST00000637551 ARHGEF5Q12774 1597 aa28.54■■■□□ 2.16
CLN3-259ENST00000637551 CAMSAP2Q08AD1 1489 aa28.53■■■□□ 2.16
CLN3-259ENST00000637551 MBD5Q9P267 1494 aa28.53■■■□□ 2.16
CLN3-259ENST00000637551 ATP10AO60312 1499 aa28.53■■■□□ 2.16
CLN3-259ENST00000637551 C9orf84Q5VXU9 1444 aa28.52■■■□□ 2.16
CLN3-259ENST00000637551 YEATS2Q9ULM3 1422 aa28.52■■■□□ 2.16
CLN3-259ENST00000637551 INO80Q9ULG1 1556 aaPredicted RBP28.51■■■□□ 2.15
CLN3-259ENST00000637551 KIDINS220Q9ULH0 1771 aa28.5■■■□□ 2.15
CLN3-259ENST00000637551 ZNF777Q9ULD5 760 aaPredicted RBP28.5■■■□□ 2.15
CLN3-259ENST00000637551 DIP2CQ9Y2E4 1556 aa28.5■■■□□ 2.15
CLN3-259ENST00000637551 LMTK3Q96Q04 1460 aa28.49■■■□□ 2.15
CLN3-259ENST00000637551 AFAP1Q8N556 730 aa28.49■■■□□ 2.15
CLN3-259ENST00000637551 RTEL1-TNFRSF6BF6WH68 1400 aa28.48■■■□□ 2.15
CLN3-259ENST00000637551 CCDC141Q6ZP82 1450 aa28.47■■■□□ 2.15
CLN3-259ENST00000637551 ATP7AQ04656 1500 aa28.46■■■□□ 2.15
CLN3-259ENST00000637551 ABCA6Q8N139 1617 aa28.46■■■□□ 2.15
CLN3-259ENST00000637551 BCORL1Q5H9F3 1711 aa28.45■■■□□ 2.14
CLN3-259ENST00000637551 AGLP35573 1532 aa28.43■■■□□ 2.14
CLN3-259ENST00000637551 MADDQ8WXG6 1647 aa28.42■■■□□ 2.14
CLN3-259ENST00000637551 FGD6Q6ZV73 1430 aa28.42■■■□□ 2.14
CLN3-259ENST00000637551 SPAG9O60271 1321 aaKnown RBP28.42■■■□□ 2.14
CLN3-259ENST00000637551 TCOF1Q13428 1488 aaKnown RBP28.41■■■□□ 2.14
CLN3-259ENST00000637551 HNRNPMP52272 730 aaKnown RBP eCLIP28.41■■■□□ 2.14
CLN3-259ENST00000637551 MAST1Q9Y2H9 1570 aa28.4■■■□□ 2.14
CLN3-259ENST00000637551 ZNF644Q9H582 1327 aaPredicted RBP28.4■■■□□ 2.14
CLN3-259ENST00000637551 PTPN23Q9H3S7 1636 aa28.4■■■□□ 2.14
CLN3-259ENST00000637551 ADGBQ8N7X0 1667 aa28.39■■■□□ 2.14
CLN3-259ENST00000637551 ARID4BQ4LE39 1312 aaPredicted RBP28.36■■■□□ 2.13
CLN3-259ENST00000637551 PLXNC1O60486 1568 aa28.36■■■□□ 2.13
CLN3-259ENST00000637551 SIGLEC1Q9BZZ2 1709 aa28.35■■■□□ 2.13
CLN3-259ENST00000637551 SHANK2Q9UPX8 1470 aa28.34■■■□□ 2.13
CLN3-259ENST00000637551 CROCC2H7BZ55 1655 aa28.31■■■□□ 2.12
CLN3-259ENST00000637551 DNMT1P26358 1616 aaKnown RBP28.3■■■□□ 2.12
CLN3-259ENST00000637551 HSPA2P54652 639 aa28.3■■■□□ 2.12
CLN3-259ENST00000637551 CERKQ8TCT0 537 aa28.29■■■□□ 2.12
CLN3-259ENST00000637551 MYT1LQ9UL68 1186 aa28.29■■■□□ 2.12
CLN3-259ENST00000637551 RIMS1Q86UR5 1692 aaKnown RBP28.28■■■□□ 2.12
CLN3-259ENST00000637551 A2MP01023 1474 aa28.27■■■□□ 2.12
CLN3-259ENST00000637551 TSPY4P0CV99 314 aa28.27■■■□□ 2.12
CLN3-259ENST00000637551 TSPY10P0CW01 314 aa28.27■■■□□ 2.12
CLN3-259ENST00000637551 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.24■■■□□ 2.11
CLN3-259ENST00000637551 FER1L4A9Z1Z3 1794 aa28.23■■■□□ 2.11
CLN3-259ENST00000637551 FAM135AQ9P2D6 1515 aa28.23■■■□□ 2.11
CLN3-259ENST00000637551 DHX29Q7Z478 1369 aaKnown RBP28.21■■■□□ 2.11
CLN3-259ENST00000637551 DAPK1P53355 1430 aa28.2■■■□□ 2.11
CLN3-259ENST00000637551 ABCC5O15440 1437 aa28.19■■■□□ 2.1
CLN3-259ENST00000637551 ILDR2Q71H61 639 aa28.19■■■□□ 2.1
CLN3-259ENST00000637551 EIF2AK4Q9P2K8 1649 aaKnown RBP28.18■■■□□ 2.1
CLN3-259ENST00000637551 SOCS7O14512 581 aa28.17■■■□□ 2.1
CLN3-259ENST00000637551 PPP6R1Q9UPN7 881 aa28.17■■■□□ 2.1
CLN3-259ENST00000637551 CNTLNQ9NXG0 1405 aa28.17■■■□□ 2.1
CLN3-259ENST00000637551 ADGRL2O95490 1459 aa28.14■■■□□ 2.09
CLN3-259ENST00000637551 DUOX2Q9NRD8 1548 aa28.13■■■□□ 2.09
CLN3-259ENST00000637551 DISP3Q9P2K9 1392 aa28.13■■■□□ 2.09
CLN3-259ENST00000637551 PLPPR3Q6T4P5 718 aa28.13■■■□□ 2.09
CLN3-259ENST00000637551 MROH2AA6NES4 1674 aa28.13■■■□□ 2.09
CLN3-259ENST00000637551 RRBP1Q9P2E9 1410 aaKnown RBP28.1■■■□□ 2.09
CLN3-259ENST00000637551 RNF17Q9BXT8 1623 aaKnown RBP28.08■■■□□ 2.09
CLN3-259ENST00000637551 ERBINQ96RT1 1412 aa28.08■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms