RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 LSM11P83369 360 aaKnown RBP eCLIP6.79□□□□□ -1.32
VIM-210ENST00000637053 SPOCK2Q92563 424 aa6.79□□□□□ -1.32
VIM-210ENST00000637053 ZNF316A6NFI3 1004 aaPredicted RBP6.78□□□□□ -1.32
VIM-210ENST00000637053 POTEEQ6S8J3 1075 aa6.77□□□□□ -1.33
VIM-210ENST00000637053 PLA2G2EQ9NZK7 142 aa6.74□□□□□ -1.33
VIM-210ENST00000637053 PHF8Q9UPP1 1060 aa6.74□□□□□ -1.33
VIM-210ENST00000637053 SOX12O15370 315 aa6.73□□□□□ -1.33
VIM-210ENST00000637053 AXIN2Q9Y2T1 843 aa6.73□□□□□ -1.33
VIM-210ENST00000637053 RNF25Q96BH1 459 aaPredicted RBP6.71□□□□□ -1.34
VIM-210ENST00000637053 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.69□□□□□ -1.34
VIM-210ENST00000637053 NUDT7P0C024 238 aa6.69□□□□□ -1.34
VIM-210ENST00000637053 ZFP91Q96JP5 570 aaPredicted RBP6.69□□□□□ -1.34
VIM-210ENST00000637053 LHX6Q9UPM6 363 aa6.68□□□□□ -1.34
VIM-210ENST00000637053 KIF3CO14782 793 aa6.67□□□□□ -1.34
VIM-210ENST00000637053 PBX2P40425 430 aa6.67□□□□□ -1.34
VIM-210ENST00000637053 HCSTQ9UBK5 93 aa6.67□□□□□ -1.34
VIM-210ENST00000637053 FBXO22Q8NEZ5 403 aa6.66□□□□□ -1.34
VIM-210ENST00000637053 C2orf72A6NCS6 295 aa6.65□□□□□ -1.34
VIM-210ENST00000637053 RIOK3O14730 519 aaKnown RBP6.65□□□□□ -1.34
VIM-210ENST00000637053 TRIM41Q8WV44 630 aa6.65□□□□□ -1.34
VIM-210ENST00000637053 ADGRD1Q6QNK2 874 aa6.63□□□□□ -1.35
VIM-210ENST00000637053 PCDHGA4Q9Y5G9 962 aa6.63□□□□□ -1.35
VIM-210ENST00000637053 VGFO15240 615 aaPredicted RBP6.61□□□□□ -1.35
VIM-210ENST00000637053 NLRP6P59044 892 aa6.61□□□□□ -1.35
VIM-210ENST00000637053 HRO43593 1189 aa6.6□□□□□ -1.35
VIM-210ENST00000637053 SLC34A2O95436 690 aa6.6□□□□□ -1.35
VIM-210ENST00000637053 KDM4FA0A1W2PPD8 638 aa6.59□□□□□ -1.35
VIM-210ENST00000637053 ARHGAP33O14559 1287 aa6.59□□□□□ -1.35
VIM-210ENST00000637053 DMRTA1Q5VZB9 504 aa6.59□□□□□ -1.35
VIM-210ENST00000637053 MFRPQ9BY79 579 aa6.59□□□□□ -1.35
VIM-210ENST00000637053 PSEN2P49810 448 aa6.57□□□□□ -1.36
VIM-210ENST00000637053 BCL11BQ9C0K0 894 aaPredicted RBP6.56□□□□□ -1.36
VIM-210ENST00000637053 TK2O00142 265 aa6.55□□□□□ -1.36
VIM-210ENST00000637053 KCTD12Q96CX2 325 aaKnown RBP6.55□□□□□ -1.36
VIM-210ENST00000637053 STK24Q9Y6E0 443 aa6.52□□□□□ -1.37
VIM-210ENST00000637053 TMC2Q8TDI7 906 aa6.5□□□□□ -1.37
VIM-210ENST00000637053 PSDA5PKW4 1024 aaPredicted RBP6.49□□□□□ -1.37
VIM-210ENST00000637053 PPP1R37O75864 691 aa6.48□□□□□ -1.37
VIM-210ENST00000637053 PTPN5P54829 565 aa6.48□□□□□ -1.37
VIM-210ENST00000637053 PTCD2Q8WV60 388 aaKnown RBP6.48□□□□□ -1.37
VIM-210ENST00000637053 IRX2Q9BZI1 471 aaPredicted RBP6.47□□□□□ -1.37
VIM-210ENST00000637053 RGS20O76081 388 aa6.46□□□□□ -1.38
VIM-210ENST00000637053 IFFO2Q5TF58 517 aa6.46□□□□□ -1.38
VIM-210ENST00000637053 STK25O00506 426 aa6.45□□□□□ -1.38
VIM-210ENST00000637053 PPP4R3BQ5MIZ7 849 aa6.45□□□□□ -1.38
VIM-210ENST00000637053 KCNK17Q96T54 332 aa6.45□□□□□ -1.38
VIM-210ENST00000637053 VPS9D1Q9Y2B5 631 aa6.45□□□□□ -1.38
VIM-210ENST00000637053 A0A0G2JS52 829 aa6.44□□□□□ -1.38
VIM-210ENST00000637053 STAC3Q96MF2 364 aa6.43□□□□□ -1.38
VIM-210ENST00000637053 THSD4Q6ZMP0 1018 aa6.42□□□□□ -1.38
VIM-210ENST00000637053 FOXK1P85037 733 aa6.41□□□□□ -1.38
VIM-210ENST00000637053 PLPP6Q8IY26 295 aa6.41□□□□□ -1.38
VIM-210ENST00000637053 BHMG1C9JSJ3 638 aaPredicted RBP6.4□□□□□ -1.38
VIM-210ENST00000637053 TAOK2Q9UL54 1235 aa6.4□□□□□ -1.38
VIM-210ENST00000637053 DSG2Q14126 1118 aa6.39□□□□□ -1.39
VIM-210ENST00000637053 SLC4A5Q9BY07 1137 aa6.38□□□□□ -1.39
VIM-210ENST00000637053 GPHNQ9NQX3 736 aaPredicted RBP6.37□□□□□ -1.39
VIM-210ENST00000637053 BCL2L12Q9HB09 334 aa6.36□□□□□ -1.39
VIM-210ENST00000637053 SLC24A1O60721 1099 aa6.35□□□□□ -1.39
VIM-210ENST00000637053 OXER1Q8TDS5 423 aa6.35□□□□□ -1.39
VIM-210ENST00000637053 WNT2BQ93097 391 aa6.35□□□□□ -1.39
VIM-210ENST00000637053 ZBED2Q9BTP6 218 aa6.35□□□□□ -1.39
VIM-210ENST00000637053 LCE2BO14633 110 aa6.34□□□□□ -1.39
VIM-210ENST00000637053 RGL2O15211 777 aa6.34□□□□□ -1.39
VIM-210ENST00000637053 TBC1D12O60347 775 aa6.34□□□□□ -1.39
VIM-210ENST00000637053 ZNF454Q8N9F8 522 aa6.34□□□□□ -1.39
VIM-210ENST00000637053 KCNH8Q96L42 1107 aa6.34□□□□□ -1.39
VIM-210ENST00000637053 Q6ZNB5 142 aa6.33□□□□□ -1.4
VIM-210ENST00000637053 ECM2O94769 699 aaPredicted RBP6.32□□□□□ -1.4
VIM-210ENST00000637053 FOSBP53539 338 aa6.32□□□□□ -1.4
VIM-210ENST00000637053 UPF1Q92900 1129 aaKnown RBP eCLIP6.32□□□□□ -1.4
VIM-210ENST00000637053 GOLGA8CPA6NN73 597 aa6.31□□□□□ -1.4
VIM-210ENST00000637053 MRPL50Q8N5N7 158 aaKnown RBP6.31□□□□□ -1.4
VIM-210ENST00000637053 ITGBL1O95965 494 aaPredicted RBP6.3□□□□□ -1.4
VIM-210ENST00000637053 PTPREP23469 700 aa6.3□□□□□ -1.4
VIM-210ENST00000637053 PKD2Q13563 968 aa6.29□□□□□ -1.4
VIM-210ENST00000637053 ADAM33Q9BZ11 813 aa6.29□□□□□ -1.4
VIM-210ENST00000637053 ANO8Q9HCE9 1232 aaPredicted RBP6.27□□□□□ -1.41
VIM-210ENST00000637053 BCAMP50895 628 aa6.25□□□□□ -1.41
VIM-210ENST00000637053 NBPF3Q9H094 633 aa6.25□□□□□ -1.41
VIM-210ENST00000637053 JPH4Q96JJ6 628 aa6.24□□□□□ -1.41
VIM-210ENST00000637053 PROX2Q3B8N5 592 aa6.23□□□□□ -1.41
VIM-210ENST00000637053 ZDHHC16Q969W1 377 aa6.23□□□□□ -1.41
VIM-210ENST00000637053 CRISPLD2Q9H0B8 497 aa6.23□□□□□ -1.41
VIM-210ENST00000637053 COL9A1P20849 921 aa6.22□□□□□ -1.41
VIM-210ENST00000637053 ANKK1Q8NFD2 765 aa6.22□□□□□ -1.41
VIM-210ENST00000637053 RABGEF1Q9UJ41 708 aa6.22□□□□□ -1.41
VIM-210ENST00000637053 EVI5O60447 810 aa6.21□□□□□ -1.42
VIM-210ENST00000637053 PPP1R15BQ5SWA1 713 aa6.21□□□□□ -1.42
VIM-210ENST00000637053 TRAF7Q6Q0C0 670 aa6.21□□□□□ -1.42
VIM-210ENST00000637053 WBP1LQ9NX94 342 aa6.21□□□□□ -1.42
VIM-210ENST00000637053 SOWAHBA6NEL2 793 aa6.2□□□□□ -1.42
VIM-210ENST00000637053 PPP1R3GB7ZBB8 358 aa6.19□□□□□ -1.42
VIM-210ENST00000637053 KCNC4Q03721 635 aa6.19□□□□□ -1.42
VIM-210ENST00000637053 NCKAP5LQ9HCH0 1330 aa6.19□□□□□ -1.42
VIM-210ENST00000637053 GFRA3O60609 400 aa6.18□□□□□ -1.42
VIM-210ENST00000637053 ZFRQ96KR1 1074 aaKnown RBP6.18□□□□□ -1.42
VIM-210ENST00000637053 PCDHGA10Q9Y5H3 936 aa6.18□□□□□ -1.42
VIM-210ENST00000637053 LAPTM4AQ15012 233 aa6.17□□□□□ -1.42
VIM-210ENST00000637053 NKX1-1Q15270 411 aaPredicted RBP6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms