RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 SUPT16HQ9Y5B9 1047 aaKnown RBP14.64□□□□□ -0.07
CLIP1-219ENST00000620786 KIF3BO15066 747 aa14.64□□□□□ -0.07
CLIP1-219ENST00000620786 RGS3P49796 1198 aa14.63□□□□□ -0.07
CLIP1-219ENST00000620786 FOXD1Q16676 465 aa14.63□□□□□ -0.07
CLIP1-219ENST00000620786 MROH2BQ7Z745 1585 aa14.63□□□□□ -0.07
CLIP1-219ENST00000620786 ISY1Q9ULR0 285 aaKnown RBP14.62□□□□□ -0.07
CLIP1-219ENST00000620786 ANKRD30AQ9BXX3 1397 aa14.61□□□□□ -0.07
CLIP1-219ENST00000620786 FMN1Q68DA7 1419 aa14.61□□□□□ -0.07
CLIP1-219ENST00000620786 SETD5Q9C0A6 1442 aa14.61□□□□□ -0.07
CLIP1-219ENST00000620786 ROCK2O75116 1388 aaKnown RBP14.61□□□□□ -0.07
CLIP1-219ENST00000620786 NUP155O75694 1391 aa14.61□□□□□ -0.07
CLIP1-219ENST00000620786 HNRNPMP52272 730 aaKnown RBP eCLIP14.6□□□□□ -0.07
CLIP1-219ENST00000620786 NUTM2DQ5VT03 806 aaPredicted RBP14.6□□□□□ -0.07
CLIP1-219ENST00000620786 WASHC2CQ9Y4E1 1318 aa14.59□□□□□ -0.07
CLIP1-219ENST00000620786 TMX4Q9H1E5 349 aaPredicted RBP14.59□□□□□ -0.07
CLIP1-219ENST00000620786 TRIM44Q96DX7 344 aaPredicted RBP14.58□□□□□ -0.07
CLIP1-219ENST00000620786 ANP32EQ9BTT0 268 aa14.58□□□□□ -0.07
CLIP1-219ENST00000620786 SPAG9O60271 1321 aaKnown RBP14.58□□□□□ -0.08
CLIP1-219ENST00000620786 PTMAP06454 111 aaKnown RBP14.58□□□□□ -0.08
CLIP1-219ENST00000620786 EIF3AQ14152 1382 aaKnown RBP14.57□□□□□ -0.08
CLIP1-219ENST00000620786 KTN1Q86UP2 1357 aaKnown RBP14.56□□□□□ -0.08
CLIP1-219ENST00000620786 HSP90AB1P08238 724 aaKnown RBP14.56□□□□□ -0.08
CLIP1-219ENST00000620786 HSPA5P11021 654 aaKnown RBP14.56□□□□□ -0.08
CLIP1-219ENST00000620786 NGDNQ8NEJ9 315 aaKnown RBP14.55□□□□□ -0.08
CLIP1-219ENST00000620786 CADPSQ9ULU8 1353 aa14.54□□□□□ -0.08
CLIP1-219ENST00000620786 CLSTN1O94985 981 aa14.54□□□□□ -0.08
CLIP1-219ENST00000620786 VPS8Q8N3P4 1428 aa14.54□□□□□ -0.08
CLIP1-219ENST00000620786 U2AF1L5P0DN76 240 aaPredicted RBP14.53□□□□□ -0.08
CLIP1-219ENST00000620786 U2AF1Q01081 240 aaKnown RBP eCLIP14.53□□□□□ -0.08
CLIP1-219ENST00000620786 KANK4Q5T7N3 995 aaPredicted RBP14.53□□□□□ -0.08
CLIP1-219ENST00000620786 MPHOSPH9Q99550 1183 aa14.53□□□□□ -0.08
CLIP1-219ENST00000620786 CALD1Q05682 793 aaKnown RBP14.52□□□□□ -0.08
CLIP1-219ENST00000620786 CYB5RLQ6IPT4 315 aa14.52□□□□□ -0.09
CLIP1-219ENST00000620786 JPH4Q96JJ6 628 aa14.51□□□□□ -0.09
CLIP1-219ENST00000620786 MCCP23508 829 aa14.51□□□□□ -0.09
CLIP1-219ENST00000620786 APBB1O00213 710 aa14.51□□□□□ -0.09
CLIP1-219ENST00000620786 TOP2AP11388 1531 aaKnown RBP14.51□□□□□ -0.09
CLIP1-219ENST00000620786 AEBP2Q6ZN18 517 aaPredicted RBP14.51□□□□□ -0.09
CLIP1-219ENST00000620786 TERF2IPQ9NYB0 399 aa14.5□□□□□ -0.09
CLIP1-219ENST00000620786 CCDC18Q5T9S5 1454 aa14.5□□□□□ -0.09
CLIP1-219ENST00000620786 FHOD3Q2V2M9 1422 aa14.5□□□□□ -0.09
CLIP1-219ENST00000620786 RAPGEF2Q9Y4G8 1499 aa14.5□□□□□ -0.09
CLIP1-219ENST00000620786 PPP4R2Q9NY27 417 aa14.5□□□□□ -0.09
CLIP1-219ENST00000620786 NUTM2FA1L443 756 aa14.5□□□□□ -0.09
CLIP1-219ENST00000620786 PLCB2Q00722 1185 aa14.49□□□□□ -0.09
CLIP1-219ENST00000620786 TIMELESSQ9UNS1 1208 aa14.49□□□□□ -0.09
CLIP1-219ENST00000620786 IPO8O15397 1037 aaKnown RBP14.49□□□□□ -0.09
CLIP1-219ENST00000620786 WIZO95785 1651 aa14.48□□□□□ -0.09
CLIP1-219ENST00000620786 CHMP3Q9Y3E7 222 aa14.48□□□□□ -0.09
CLIP1-219ENST00000620786 AMPHP49418 695 aa14.48□□□□□ -0.09
CLIP1-219ENST00000620786 GOLGA6L6A8MZA4 724 aa14.47□□□□□ -0.09
CLIP1-219ENST00000620786 G3V3G9 751 aa14.47□□□□□ -0.09
CLIP1-219ENST00000620786 DCAF8Q5TAQ9 597 aa14.47□□□□□ -0.09
CLIP1-219ENST00000620786 LTV1Q96GA3 475 aaPredicted RBP14.47□□□□□ -0.09
CLIP1-219ENST00000620786 RSPH4AQ5TD94 716 aa14.47□□□□□ -0.09
CLIP1-219ENST00000620786 GOLGA6L4A6NEF3 574 aa14.46□□□□□ -0.09
CLIP1-219ENST00000620786 TAF7LQ5H9L4 462 aa14.46□□□□□ -0.09
CLIP1-219ENST00000620786 OSCARQ8IYS5 282 aa14.46□□□□□ -0.09
CLIP1-219ENST00000620786 GNL2Q13823 731 aaKnown RBP14.46□□□□□ -0.09
CLIP1-219ENST00000620786 STK31Q9BXU1 1019 aa14.46□□□□□ -0.1
CLIP1-219ENST00000620786 DNTTIP2Q5QJE6 756 aaKnown RBP14.45□□□□□ -0.1
CLIP1-219ENST00000620786 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.45□□□□□ -0.1
CLIP1-219ENST00000620786 GORABQ5T7V8 394 aa14.45□□□□□ -0.1
CLIP1-219ENST00000620786 HSCBQ8IWL3 235 aa14.44□□□□□ -0.1
CLIP1-219ENST00000620786 ITPRIPQ8IWB1 547 aa14.44□□□□□ -0.1
CLIP1-219ENST00000620786 CHMP4AQ9BY43 222 aa14.43□□□□□ -0.1
CLIP1-219ENST00000620786 GLIPR1L2Q4G1C9 344 aa14.43□□□□□ -0.1
CLIP1-219ENST00000620786 KIAA1211Q6ZU35 1233 aa14.43□□□□□ -0.1
CLIP1-219ENST00000620786 RAB3GAP2Q9H2M9 1393 aa14.43□□□□□ -0.1
CLIP1-219ENST00000620786 NCBP3Q53F19 620 aaKnown RBP14.42□□□□□ -0.1
CLIP1-219ENST00000620786 FANCD2Q9BXW9 1451 aa14.42□□□□□ -0.1
CLIP1-219ENST00000620786 CFAP44Q96MT7 982 aa14.42□□□□□ -0.1
CLIP1-219ENST00000620786 PTPRGP23470 1445 aa14.41□□□□□ -0.1
CLIP1-219ENST00000620786 RALBP1Q15311 655 aa14.41□□□□□ -0.1
CLIP1-219ENST00000620786 TRAK1Q9UPV9 953 aa14.41□□□□□ -0.1
CLIP1-219ENST00000620786 EVA1CP58658 441 aa14.41□□□□□ -0.1
CLIP1-219ENST00000620786 B4GALNT3Q6L9W6 998 aa14.4□□□□□ -0.1
CLIP1-219ENST00000620786 MEX3CQ5U5Q3 659 aaKnown RBP14.4□□□□□ -0.1
CLIP1-219ENST00000620786 GTF2E1P29083 439 aaPredicted RBP14.39□□□□□ -0.11
CLIP1-219ENST00000620786 ATAD2BQ9ULI0 1458 aa14.38□□□□□ -0.11
CLIP1-219ENST00000620786 GPATCH3Q96I76 525 aa14.37□□□□□ -0.11
CLIP1-219ENST00000620786 SPRYD3Q8NCJ5 442 aa14.37□□□□□ -0.11
CLIP1-219ENST00000620786 SLC4A10Q6U841 1118 aa14.36□□□□□ -0.11
CLIP1-219ENST00000620786 MSH5O43196 834 aa14.36□□□□□ -0.11
CLIP1-219ENST00000620786 NRDCO43847 1150 aa14.36□□□□□ -0.11
CLIP1-219ENST00000620786 CCER2I3L3R5 266 aa14.36□□□□□ -0.11
CLIP1-219ENST00000620786 LMOD3Q0VAK6 560 aa14.36□□□□□ -0.11
CLIP1-219ENST00000620786 UACAQ9BZF9 1416 aa14.35□□□□□ -0.11
CLIP1-219ENST00000620786 CCDC146Q8IYE0 955 aa14.35□□□□□ -0.11
CLIP1-219ENST00000620786 SMC4Q9NTJ3 1288 aa14.35□□□□□ -0.11
CLIP1-219ENST00000620786 HDAC5Q9UQL6 1122 aa14.35□□□□□ -0.11
CLIP1-219ENST00000620786 FAM69CQ0P6D2 419 aa14.35□□□□□ -0.11
CLIP1-219ENST00000620786 FRAT2O75474 233 aaPredicted RBP14.34□□□□□ -0.11
CLIP1-219ENST00000620786 CCDC144AA2RUR9 1427 aa14.34□□□□□ -0.11
CLIP1-219ENST00000620786 RWDD1Q9H446 243 aaPredicted RBP14.34□□□□□ -0.11
CLIP1-219ENST00000620786 C1orf141Q5JVX7 400 aa14.33□□□□□ -0.12
CLIP1-219ENST00000620786 SMARCA4P51532 1647 aa14.33□□□□□ -0.12
CLIP1-219ENST00000620786 VGFO15240 615 aaPredicted RBP14.32□□□□□ -0.12
CLIP1-219ENST00000620786 L3MBTL2Q969R5 705 aa14.32□□□□□ -0.12
CLIP1-219ENST00000620786 COG3Q96JB2 828 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms